Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq14 158 2e-33 seq8 118 1e-21 >seq14 Length=25249 Score = 158 bits (174), Expect = 2e-33 Identities = 440/670 (66%), Gaps = 4/670 (1%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||||| |||||| || |||| | || || || ||| || | ||||||||| Sbjct 6905 GGGCACATCAGCGACCAGTCGCCGTTCTGCTCGACGCGGCGCATGAACAAGTCAGGAATC 6846 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || || || | || || || | | | ||||| || || || || ||| Sbjct 6845 CACAGCGCCAGGAACAGGTCGCGCGCGCGCACCTCCTCCTTACCGTGGTTTTTGCGCAGA 6786 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 || | |||| | | | || || |||||||| |||| ||| ||||| | | || || Sbjct 6785 TCAATGAACTCGAACACGTCCGAGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGA 6726 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || ||||| || | ||| | || ||||| || || || | | ||| || Sbjct 6725 CGCTTGTTGCCACCCTGGTCCACGTAGCGCGCTGTGTTGTTGTATACGCGGAGCATGGGC 6666 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 | ||||||||| | ||||| ||||||| || || || | ||||| || || Sbjct 6665 ACAATACCGTTGCTCACGCCATTCGTACCGGCAATGTACGAGCCCGTTGCACGGATGTTG 6606 Query 63483 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGT 63541 || ||||| || || || ||| | || ||| | ||||| ||| || | ||| Sbjct 6605 TGGATATTCAGACCAATACCACCGGCCGTCTTGCTGATCATCGCGCA-CGTCTTGAGCGT 6547 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 ||| ||||||||||| || || || ||||| | | || || ||| |||||||| Sbjct 6546 GTCGTAGATACCCTCGATAGAGTCGTCCTTCATGCTCACAAGGAAGCAGGACGACATTTG 6487 Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661 | | || || ||||| || | ||| || || ||||| ||||| || || || Sbjct 6486 GGGGTTGGGCGTGCCAGCATTGAACAGGGTCGGCGACGCGTGTGTAAAGGCCTTCTCGGA 6427 Query 63662 AA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGA 63720 | |||| ||||| |||||||| || | | |||| || || || || |||| Sbjct 6426 CATGTAG-TTGTATGTCTCAATGGCGCTCTTCACATCCTCGCCGTGGATGCCCACAGCGA 6368 Query 63721 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGG 63780 ||||||| | ||||||||| || | || ||| |||| || || || || ||||| Sbjct 6367 CACGCATGAGCATGTGCTGGGGGCGCTCCGCGACCTTGCCATTGATGCGCAGCAGGTAGG 6308 Query 63781 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63840 | |||| || || || || ||| ||||||| |||||| || |||||||| | Sbjct 6307 AGCGCTCCAGCGTCTTGAAGCCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAAATGACCG 6248 Query 63841 CCGAGTTGAG 63850 |||||| ||| Sbjct 6247 CCGAGTCGAG 6238 >seq8 Length=40485 Score = 118 bits (130), Expect = 1e-21 Identities = 380/584 (65%), Gaps = 18/584 (3%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||||||||||||||| | || || ||||| || |||| || Sbjct 5236 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAACGACAGG 5177 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || |||||||| ||||| || || || || || || ||| Sbjct 5176 CCAGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCCGAGAAAAAG 5117 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGC---TGTCATG 33479 || || || || || |||||||| | || | ||| | | ||| ||||| |||| Sbjct 5116 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTC-CGAGAACGAGGCGCGCTTGTCCGA 5058 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||| |||||||||| || || ||| || || || ||||| || Sbjct 5057 GATCCAGCGCAAGGCCCACTCGGCCTTCTGCTTGACGACAGGGATGGTCTCGATGGCGTT 4998 Query 33540 AAAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 |||||| || || | | || || | || || || || | || | Sbjct 4997 AAAGAGGTA----TTCGCGCTGCTCCGACTCACGGATGTACGTGTCAATGAGGAGCGAGT 4942 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 || | ||||| || ||||| || || |||||||| |||||||| || | ||||| | Sbjct 4941 ACGTCTCCGAGTGGATGTTCTCCATCATAATCTGAAAGCCGTAGAAGCAGCGGGCCTCAG 4882 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 ||| || || | | || || ||| ||| || || || || || ||||| || Sbjct 4881 CGGCCTGCACCTCGGCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATGCCGTCTGAGG 4822 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTA 33771 | ||||| || |||| ||||| ||| ||| | || | || ||| | | Sbjct 4821 CAGCAAAGAAGGCCAGGACATGGCTTACAAAGTGGCGCTCAT-TGTCGTTCATGCGGTGG 4763 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | ||| || | | || || || | || | || || | ||||| || || ||||| Sbjct 4762 TCCCAGTCGTGCAGGTCCTTCGACAGGTCCATCTCCTCGGCGGTCCAGAACGACGCCTCG 4703 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||||| || ||||| | |||||| || | || |||| ||||| Sbjct 4702 GCCTTCTTGTACATCTGCCAGATCTCGTGGTAGCGGATCGGGAA 4659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945416813640