Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq105 93.3 3e-14 seq102 87.8 1e-12 >seq105 Length=229645 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||||||| |||||| || |||||||||||| | Sbjct 227312 CCACCACGCAGGCGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 227253 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || |||||||| | || || |||||||||||| || Sbjct 227252 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 227193 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| | |||| Sbjct 227192 ATACCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCGATCGTGTCGGAAGACTCCA 227135 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || |||||||| || ||||| || | ||||| Sbjct 227134 CCTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAACACTTGCAT 227086 >seq102 Length=51898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||||||||| |||||| || |||||||||||| | Sbjct 9023 CCACCACGCAGACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 8964 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || || ||| | || || |||||||||||| ||| Sbjct 8963 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 8904 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | ||| || | | | | ||||| | ||| Sbjct 8903 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGATTCCACC 8844 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||| || || || || || || || || |||||||| |||||| || Sbjct 8843 TCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATTGTG 8793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086869424710