Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14 149 8e-31 seq8 111 2e-19 >seq14 Length=25249 Score = 149 bits (164), Expect = 8e-31 Identities = 450/690 (65%), Gaps = 4/690 (1%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || || || || | || ||||||| |||||| || |||| | || || || Sbjct 6925 CCAGGCCGGGGCACTCGGCGGGGCACATCAGCGACCAGTCGCCGTTCTGCTCGACGCGGC 6866 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 ||| || | ||||||||||| || || | || || || | | | ||||| | Sbjct 6865 GCATGAACAAGTCAGGAATCCACAGCGCCAGGAACAGGTCGCGCGCGCGCACCTCCTCCT 6806 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || || || ||||| | |||| | | | || || |||||||| |||| || Sbjct 6805 TACCGTGGTTTTTGCGCAGATCAATGAACTCGAACACGTCCGAGTGCCACGGCTCCAGGT 6746 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | || || || ||||| || ||||| || | ||| | || ||||| | Sbjct 6745 AGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCCACGTAGCGCGCTGTGTTGT 6686 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | || || | | ||| || | |||||| ||| ||||| || || | || || Sbjct 6685 TGTATACGCGGAGCATGGGCACAATACCGTTGCTCACGCCATTCGTACCGGCAATGTACG 6626 Query 63318 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || | ||||| || || || ||||| || || || ||| | || ||| | Sbjct 6625 AGCCCGTTGCACGGATGTTGTGGATATTCAGACCAATACCACCGGCCGTCTTGCTGATCA 6566 Query 63378 ATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 63436 ||||| ||| || | ||| || ||||| ||||| ||| || ||| ||||| | | Sbjct 6565 TCGCGCA-CGTCTTGAGCGTGTCGTAGATACCCTCGATAGAGTCGTCCTTCATGCTCACA 6507 Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 || || ||| ||||||||| | || || ||||| || | ||| || || ||| Sbjct 6506 AGGAAGCAGGACGACATTTGGGGGTTGGGCGTGCCAGCATTGAACAGGGTCGGCGACGCG 6447 Query 63497 TGAGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 || ||||| || || || | |||| ||||| |||||||| || | | |||| Sbjct 6446 TGTGTAAAGGCCTTCTCGGACATGTAG-TTGTATGTCTCAATGGCGCTCTTCACATCCTC 6388 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 || || || || ||||||||||| | ||||||||| || | || ||| |||| Sbjct 6387 GCCGTGGATGCCCACAGCGACACGCATGAGCATGTGCTGGGGGCGCTCCGCGACCTTGCC 6328 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63675 || || || || |||||| |||| || || || || ||| ||||||| ||| Sbjct 6327 ATTGATGCGCAGCAGGTAGGAGCGCTCCAGCGTCTTGAAGCCGAAAAAGTTGTAGTGAAA 6268 Query 63676 GTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||| || |||||||| | |||||| ||| Sbjct 6267 GTCGCGCTCGTAAATGACCGCCGAGTCGAG 6238 >seq8 Length=40485 Score = 111 bits (122), Expect = 2e-19 Identities = 371/572 (65%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | || | ||||| || |||| || Sbjct 5236 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAACGACAGG 5177 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || ||||| || |||||||| ||||| ||||| || || || || || Sbjct 5176 CCAGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCCGAGAAAAAG 5117 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGC---TGTCATG 32836 || || || || || |||||||| | || | ||| | | ||| ||||| |||| Sbjct 5116 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTC-CGAGAACGAGGCGCGCTTGTCCGA 5058 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| ||||| |||||||||| || || ||| || ||||| || || || Sbjct 5057 GATCCAGCGCAAGGCCCACTCGGCCTTCTGCTTGACGACAGGGATGGTCTCGATGGCGTT 4998 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTA----TCAATCAAAAGACTAT 32952 |||||| || || | | || | || ||||| ||||| | || | Sbjct 4997 AAAGAGGTA----TTCGCGCTGCTCCGACTCACGGATGTACGTGTCAATGAGGAGCGAGT 4942 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 || | ||||| || ||||| || || || ||||| ||||||||||| | ||||| | Sbjct 4941 ACGTCTCCGAGTGGATGTTCTCCATCATAATCTGAAAGCCGTAGAAGCAGCGGGCCTCAG 4882 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 ||| || || | | || || || | | || || || || || ||||| || Sbjct 4881 CGGCCTGCACCTCGGCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATGCCGTCTGAGG 4822 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTA 33128 | ||||| || |||| ||||| ||| ||| | || | || ||| | | Sbjct 4821 CAGCAAAGAAGGCCAGGACATGGCTTACAAAGTGGCGCTCAT-TGTCGTTCATGCGGTGG 4763 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| || | | || || || | |||| || || | ||||| || || ||||| Sbjct 4762 TCCCAGTCGTGCAGGTCCTTCGACAGGTCCATCTCCTCGGCGGTCCAGAACGACGCCTCG 4703 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATA 33220 ||||| || ||||| | |||||| || || || Sbjct 4702 GCCTTCTTGTACATCTGCCAGATCTCGTGGTA 4671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630186228400