Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq102 114 1e-20 seq105 109 5e-19 seq27 93.3 4e-14 >seq102 Length=51898 Score = 114 bits (126), Expect = 1e-20 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| ||||||||||| | || || || | || || |||| ||||| ||| Sbjct 8794 ACAATGCAAATTTTTGTAAAGACCCTCACTGGCAAGACGATTACCCTCGAGGTGGAATCG 8853 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || ||||| ||||| |||| | || || | ||| ||||| || || ||||| || Sbjct 8854 TCGGACACGATCGACAACGTCA---AGGCCAAGATTCAG-GACAAGGAGGGTATTCCTCC 8909 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||||| | || ||||| || || || | || |||| || ||| || |||| Sbjct 8910 GGACCAACAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTGAGCGA 8969 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || |||||| ||| | ||||| Sbjct 8970 CTACAACATCCAGAAGGAGAGCACGCTGCATCTCGTGCT 9008 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || | |||| ||||| ||||| Sbjct 9025 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTCCCCTCGAGGTGGAATCGTCG 9084 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||| || || ||||| || ||| Sbjct 9085 GACACGATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAGGGCATTCCTCCGGAC 9141 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || || || | || |||| || ||| || |||| ||| Sbjct 9142 CAACAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTGAGCGACTAC 9201 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| ||| | ||||| Sbjct 9202 AACATCCAGAAGGAGAGTACGCTGCATCTCGTGCT 9236 >seq105 Length=229645 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||| | || || ||||| ||||||| || | ||||| | || |||||||| Sbjct 227083 ACCATGCAAGTGTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGAGGTGGAGTCT 227142 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| |||||| ||||| || ||| ||||| || || || || || ||| Sbjct 227143 TCCGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 227202 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || || ||||| || | || |||| |||||| || |||| ||| Sbjct 227203 CAACAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGAGCGACTAC 227262 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || |||||| || | ||||| Sbjct 227263 AACATCCAGAAGGAGAGCACGCTGCACCTCGTGCT 227297 >seq27 Length=62815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| |||| || || | ||||| | || || ||||| || Sbjct 53090 ATGCAAATCTTCGTCAAGACTCTGACTGGCAAGACGATCACCCTTGAGGTCGAGTCTTCG 53031 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| || || || || ||||| || |||| Sbjct 53030 GACACGATCGA--CAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGACC 52973 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | ||||| || || || || | || || | |||||| || |||| |||| Sbjct 52972 AACAGCGTCTGATTTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACA 52913 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||| || || | ||||| Sbjct 52912 ACATCCAGAAGGAGAGCACCCTGCACCTCGTGCT 52879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326790608635