Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8 132 1e-25 seq195 129 1e-24 seq53 102 2e-16 seq14 91.5 3e-13 >seq8 Length=40485 Score = 132 bits (146), Expect = 1e-25 Identities = 391/595 (66%), Gaps = 17/595 (3%) Strand=Plus/Minus Query 251554 ACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAG 251613 || ||||| ||||| || || |||||||||| || || || |||||| ||||| ||| Sbjct 5512 ACGCGGCGCTCGAAAAAGTTCGACTTGCCCTGGAGCGAAATGTTCTCCATAAAGTCAAAG 5453 Query 251614 GGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACA 251673 ||||| | | ||||| |||||||| | ||| || || | | |||||| |||||| Sbjct 5452 GGGTTCGCCGAGTTGTAGTGCTTGGGGTTGCCGAGGTTGACCAGCAGGCGGTCGGCCACA 5393 Query 251674 AACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGC 251732 ||||| | ||||| | ||| || | ||||||||| |||| ||| | || | || Sbjct 5392 AACTCAATGTACTGGCACATGAGGCGCGCGTTCATGCCGATCA-GCGAGACGGGCAGGGC 5334 Query 251733 CTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGC 251792 || | || |||| || |||| || ||||| | || |||||| ||| Sbjct 5333 GTCGGTCAAAAAGTCCTGCTCAATGGCCACGGCCTCGGTGATGATGCGGTTCACC-GTGT 5275 Query 251793 CAGAGACAGCTTG-TTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGAC 251851 | | | || | |||| ||| | | ||| ||| | |||| | |||||||| Sbjct 5274 CGGGGTGCGCGCGCTTCTTCAGGTGGCTGAACAAGAGGCAGGCAAAGTCGGTGTGCAGAC 5215 Query 251852 CCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCC 251911 ||||||| || ||||| |||||| || | |||||||||||| | || || ||| Sbjct 5214 CCTCGTCACGCGAGATGAGCTCGTTCGAGAACGACAGGCCAGGCATGAGACCGCGCTTCT 5155 Query 251912 TGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG 251971 ||||||| ||||| | | ||| || || ||||| | | |||||||| | | | Sbjct 5154 TGAGCCAAAAGATGGAGGCAAACGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGG 5095 Query 251972 CAACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATG 252025 | || |||||||| | ||||| |||||| ||| | | | ||||| Sbjct 5094 CGACCAGGCGCTCCGAGAACGAGGCGCGCTTGTC---CGAGATCCAGCGCAAGGCCCACT 5038 Query 252026 CTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGG 252085 | ||||||| || | ||||| || ||||| || | |||||| | | ||| | | Sbjct 5037 CGGCCTTCTGCTTGACGACAGGGATGGTCTCGATGGCGTTAAAGAGGTA--TTCGCGCTG 4980 Query 252086 CATCG--TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 | || || |||| || |||| ||||| |||||| ||||||| |||||| Sbjct 4979 CTCCGACTCACGGATGTACGTGTCAATGAGGAGCGAGTACGTCTCCGAGTGGATG 4925 >seq195 Length=32421 Score = 129 bits (142), Expect = 1e-24 Identities = 335/508 (66%), Gaps = 16/508 (3%) Strand=Plus/Plus Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCG----CGGTATGATGT 218561 |||||| || | ||||| ||| |||||||||| || || |||||| ||| | || | Sbjct 8216 ATCCCCATCTCGGACTTTATCAACAAGGAGCTGATCCTCTTCTCGATGGCGG-ACAATAT 8274 Query 218562 GGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTT 218621 || || ||||| ||||| || |||||||||||||| ||||| ||| |||| || Sbjct 8275 C---CGCTCGATTCCGAGCGTCGTCGATGGCCTCAAGCCCGGCCAGCGCAAGGTCCTGTT 8331 Query 218622 TGCCGCATTCAAGCGGAACCTGGTTCAA----GAAATTAAGGTCGCTCAGTTTTCTGGTT 218677 || | |||||||| |||| |||| ||||| ||||| ||| | |||| Sbjct 8332 TGGCTGCTTCAAGCGCAACC----TCAAGACGGAAATCAAGGTGCAGCAGCTGCAGGGTT 8387 Query 218678 ATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAG 218737 | || || || | | ||||| || || || ||||||||| | | ||||| | Sbjct 8388 ACGTCTCAGAGCACACGGCGTACCACCATGGCGACCAGAGTCTGGTGATGACGATTGTCG 8447 Query 218738 GCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGT 218797 | | || ||||||| | ||||| |||||| |||| |||| | |||||||| |||| Sbjct 8448 GTCTCGCGCAGGACTTTTGCGGCAGCAACAACGTGAATATGCTCATGCCCAACGGCCAGT 8507 Query 218798 TTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGT 218857 ||||| | || |||| || ||||| || || | || || || || Sbjct 8508 TTGGTACGCGCAGTATGGGCGGCAAGGACGCGGCCAGCGCTCGTTACATTTTCACCGCCG 8567 Query 218858 TGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTG 218917 || ||| | | ||||||||| | ||| | | || || | ||| || || || || | Sbjct 8568 TGCCGCGCATCACGCGCCAGCTCTTCCACCCCAAGGACGACGCGCTGCTCAACTACCTCG 8627 Query 218918 AGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCG 218977 | || || || || |||||||||||||| ||||| | | ||| |||| Sbjct 8628 ACGAGGACGGGCAGAGCATCGAGCCCGAGTGGTACGTGCCGGTCGTGCCGCAAGTGCTGC 8687 Query 218978 TAAATGGTGCCAATGGTATCGGGACAGG 219005 | || || ||| | |||||||| || || Sbjct 8688 TCAACGGCGCCGACGGTATCGGCACGGG 8715 >seq53 Length=44312 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| |||||| ||||| | |||||||| || || |||| ||||||||||| ||| Sbjct 22848 GGCGAGGACCTGTGTAACTGTCAGTTCTCGCTGGCCTACGGTGCCAAGATTCTGCTGAAC 22789 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || || ||| ||||||||||| |||| || |||||| |||| || || | Sbjct 22788 ACTGCCACCCTGCGTCTCAAGCGTGGCCACCGCTACGGTCTCTGTGGTCGTAACGGTTCC 22729 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 |||||| || || ||||||||||| ||||| ||| | || || || || | Sbjct 22728 GGTAAGTCGACCCTGATGCGCGCCATCCAGAACGGCCAGGTCGAGGGCTTCCCCTCGCCC 22669 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 ||||| | || ||| || ||||||||| ||||| Sbjct 22668 GAGGAGGTGCGCACCTGGTACGTCGAGCACGACCTCGAC 22630 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || ||||||||||||||||||||||| ||||| | || ||| | || | ||||| Sbjct 22494 CTCTCGGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGTGCCGTGCTGTTCAAGGCCGAC 22435 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 | || ||||| |||||||| ||||||||| ||||| || |||||| |||||| Sbjct 22434 ATTCTGCTGCTCGATGAGCCGACCAACCACTTGGACGTCATCAACGTGGCCTGG 22381 >seq14 Length=25249 Score = 91.5 bits (100), Expect = 3e-13 Identities = 228/340 (67%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCA-TAGACTTCAGTGTGGG 293090 || || || ||||||||||| |||| || |||| || || | ||| || || || Sbjct 8057 GTCTTGAGGCCCTTCTTCCAGCCGTAAAAGTGCATCGACGTAAGCTGACCAAAG-GTCGG 7999 Query 293091 AGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGC 293150 | | |||| || ||| | ||| || |||| ||||| || ||||| || ||||| Sbjct 7998 CGCGCTCAGGTGAATGTTGAGGCTTTGGCTCTGGCACACAAACGCGCCACGGTCCGCAGC 7939 Query 293151 GAGGTC---AATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGAC 293207 | ||| |||||| | | || ||||||||| |||||||| | ||||||| Sbjct 7938 CATGTCAATAATCACCTTTTGGCTA---ATCTCCCACACCGTCTTGTAGAGGGCCTTGAT 7882 Query 293208 ATCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTT 293267 | |||||||| || |||||||| || || |||| |||||||||| | ||| Sbjct 7881 GTGGTCGGGAATGCCAGCAATGTTCTGGATCGAGCCGCCGTGCGCAATAATCTTTTGCTT 7822 Query 293268 CATTGTCTCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAA 293326 ||| | ||| ||| || |||| | | | |||||||| | || | | |||||| | Sbjct 7821 CATCGAGTCGTTCCAGAGACCCA-GCTCGACAAGCTCGCGCAGCAGCCACGGGTTGACCA 7763 Query 293327 CGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTT 293366 | ||||||| || || || || || |||||||||| Sbjct 7762 CCTGGAACTCGCCCGCCAGTACACGGCGCATGTAAATGTT 7723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833784262589