Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq102 136 3e-27 seq27 116 3e-21 seq105 91.5 1e-13 >seq102 Length=51898 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || | ||| | ||| || || || |||||||| ||| Sbjct 9026 ATACCACCACGCAGACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 8967 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| ||| || || || |||||||| |||| |||||||||||||||||| Sbjct 8966 CTCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGA 8907 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | || | ||||| | ||||| Sbjct 8906 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGATTCC 8847 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||| ||||| || || || ||||||||||| ||||| Sbjct 8846 ACCTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCAT 8797 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || || | ||| | |||| || || || |||||||| |||||| Sbjct 9251 CCACCACGCAGGCGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTCGCTC 9192 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| ||| || || || |||||||| |||| ||||||||||||||||||||| Sbjct 9191 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 9132 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| |||||| || | | |||| ||||| | ||||| || Sbjct 9131 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGATTCCACC 9072 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||| ||||| || || || || || || |||||||| Sbjct 9071 TCGAGGGGAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9025 >seq27 Length=62815 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||||||| || ||| || || || || ||||||||| | Sbjct 52900 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAA 52959 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || |||||||||||||||||||||||||| || || || ||||| || | | Sbjct 52960 ATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTG 53019 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||||| | || ||||| || | ||| | ||| ||||| |||||||| || || Sbjct 53020 TCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTGCCAGTCAGAGTCTTGACG 53079 Query 114372 AAAATCTGCATGGC 114385 || || |||||||| Sbjct 53080 AAGATTTGCATGGC 53093 >seq105 Length=229645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||||||| || ||| ||| || || || || || ||| || Sbjct 227276 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCGAAG 227217 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || |||||||||||||| || || || || ||||| ||||| || | | Sbjct 227216 ATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 227157 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||||||| || || || || | ||| | ||| || |||||||| || || || Sbjct 227156 TCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACG 227097 Query 114372 AAAATCTGCATGG 114384 || | ||||||| Sbjct 227096 AACACTTGCATGG 227084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133227431148