Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq22 93.3 3e-14 seq105 87.8 1e-12 seq102 87.8 1e-12 >seq22 Length=101165 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | || ||||| || || || |||||||||||||| || || ||||| || Sbjct 10439 ACCACCGCGCAAACGCAGGACGAGGTGCAGCGTGCTCTCCTTTTGGATATTGTAGTCGCT 10498 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| ||| | || |||| |||||||| ||||| |||||||||||||| ||| ||| Sbjct 10499 CAAAGTACGCCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGCGG 10558 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 10559 AATGCCCTCCTTGTCC 10574 >seq105 Length=229645 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || ||||||||||||||||| |||||||| || || Sbjct 227313 ACCACCACGCAGGCGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GC 227255 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || | || |||| |||||||| || || ||||||||||| || ||| | Sbjct 227254 TCAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGG 227195 Query 34019 GCACGCTCTCTTTGTCC 34035 | | | ||| |||||| Sbjct 227194 GGATACCCTCCTTGTCC 227178 >seq102 Length=51898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| ||||| ||||||||||||||||| |||||||| || || Sbjct 9024 ACCACCACGCAGACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GC 8966 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || | || |||| ||||| || ||||| ||||| ||||| || ||| | Sbjct 8965 TCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAG 8906 Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043 | | | ||| |||||| ||| || Sbjct 8905 GAATACCCTCCTTGTCCTGAATCTT 8881 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| ||||| ||||| ||||||||||| |||||||| || || Sbjct 9251 CCACCACGCAGGCGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTC-GCT 9193 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || | || |||| ||||| || ||||| ||||| ||||| || ||| || Sbjct 9192 CAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGG 9133 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 9132 AATGCCCTCCTTGTCCTGAATCTT 9109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061291823658