Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq105 140 8e-28 seq27 127 5e-24 seq102 120 7e-22 seq195 84.2 5e-11 >seq105 Length=229645 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | |||||| || || ||||| || |||||| Sbjct 227312 CCACCACGCAGGCGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 227253 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| |||||||| ||| Sbjct 227252 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 227193 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || ||||| || || || | ||| || || || Sbjct 227192 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACC 227133 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||||||||| ||||||||||| | ||||| Sbjct 227132 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAACACTTGCAT 227086 >seq27 Length=62815 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| ||||| || | ||||| || || ||||| || |||||| || ||||| ||||| Sbjct 52878 AAGCACGAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTC 52937 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 || | || || || ||||| |||||||||||||| || || || || ||||| Sbjct 52938 CTCGAGCTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATC 52997 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 |||||| || || || || || || || | || || || || || || |||||||| Sbjct 52998 CTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGT 53057 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||||||||||||||| || ||||| Sbjct 53058 CTTGCCAGTCAGAGTCTTGACGAAGATTTGCAT 53090 >seq102 Length=51898 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | |||||| || || ||||| || |||||| Sbjct 9023 CCACCACGCAGACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 8964 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || ||||||||||||||||| || Sbjct 8963 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 8904 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || ||||| || || | || |||||| || Sbjct 8903 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGATTCCACC 8844 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| || |||||||| || || || ||||| || || || |||||| || Sbjct 8843 TCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATTGTG 8793 Score = 118 bits (130), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || |||||||| | ||| || || || ||||| || |||||| Sbjct 9254 TGGCCACCACGCAGGCGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTCG 9195 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || || || || || | || || || || ||||||||||||||||| Sbjct 9194 CTCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGA 9135 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || || || || || || || || | || |||||| Sbjct 9134 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGATTCC 9075 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | |||||||| || || || ||||||||||| |||||||| Sbjct 9074 ACCTCGAGGGGAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9025 >seq195 Length=32421 Score = 84.2 bits (92), Expect = 5e-11 Identities = 230/347 (66%), Gaps = 8/347 (2%) Strand=Plus/Minus Query 326033 AAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATC 326092 ||||| |||| || || ||||| | ||||||| ||| |||||||||||||||| Sbjct 7839 AAGTTGATGATCAGGCCCTTGATGTGCGAGCCGTCAAAGTCCTGGTCGGTCATGATCATC 7780 Query 326093 ACATGACCGTAACGAAG--CGAGGACG-TGTCTTTGTACACTTTACCGGTTTGAAGGCCG 326149 | ||||| || || | |||| |||| ||| || || ||| || || ||| Sbjct 7779 AGGCTGCCGTACCGCAGTCCATCGACGCTGTC---GTAGACCTTGCCGTGCTGCAGCCCG 7723 Query 326150 AGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GATGCATC 326208 ||||| | |||| | |||| || |||||||| |||| || | | | || || || Sbjct 7722 AGAATCTCCTTGATGTGTTTGATCTCGGCGTTCTTCATGAT-CTGGTCGTGCGACGCCTC 7664 Query 326209 GCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCAC 326268 ||| || || | || || || || || |||||||| || || ||||| |||||| | Sbjct 7663 GCGCACATTGAGCAGCTTGCCGCGCAGCGGGAACACACCGTACGCATCGCGGCCGACCTC 7604 Query 326269 GGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCA 326328 | | || | | || || | | || || || ||||| || || ||||| ||||| Sbjct 7603 GCTGATGCCCGACACAGCGAGCGCCTTGGCCGAGTCGCCCTCGGTGAGGATGAGCGTGCA 7544 Query 326329 CATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGG 326375 | |||| ||||| || ||||| | || || | ||| |||| Sbjct 7543 CTCGGCGCTGCGCTTCGTGCCGGCCCAATTCGCGTCCTCGAGCTTGG 7497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650938820262