Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq53 120 7e-22 seq195 87.8 4e-12 >seq53 Length=44312 Score = 120 bits (132), Expect = 7e-22 Identities = 300/452 (66%), Gaps = 9/452 (2%) Strand=Plus/Plus Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 |||||||||||||| || || || || | | || || | |||| ||||| || || Sbjct 22406 TGGTTGGTCGGCTCATCGAGCAGCAGAATGTCGGCCTTGAACAGCACGGCACGGGCCAGG 22465 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATA 334022 ||||| ||||| ||||| || || || || | |||| ||| ||| || |||| Sbjct 22466 GCGAGCTTCATCTTCCAACCACCCGAGAGGGCCGTAATGGGGCCAGCCTGACGCTGCTCG 22525 Query 334023 TCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTT 334082 |||||||| | | | || || | || | | || || | | | | || Sbjct 22526 TCAAAGCCCATCTCACCCAGGGTCTTGGCGGCCGTCTCGCG-GTCGACGT----TCAGGC 22580 Query 334083 ACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGA 334142 ||||| | | ||| || ||||| | || | |||| | || || |||||||| Sbjct 22581 GCTTGTCCTGC--TGG--ATAAAGTCCAGAATGGAAATGTCACCCTCCGAGCCGTCGAGG 22636 Query 334143 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCG 334202 ||||| || ||||| || || | || | |||||||| || || | ||| ||| Sbjct 22637 TCGTGCTCGACGTACCAGGTGCGCACCTCCTCGGGCGAGGGGAAGCCCTCGACCTGGCCG 22696 Query 334203 TTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAG 334262 ||| || ||||||||||| || || ||||| | ||||| | ||||| ||||||||| Sbjct 22697 TTCTGGATGGCGCGCATCAGGGTCGACTTACCGGAACCGTTACGACCACAGAGACCGTAG 22756 Query 334263 CGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCC 334322 |||| |||||||| ||| | | | ||||||| ||||| || |||| || ||| Sbjct 22757 CGGTGGCCACGCTTGAGACGCAGGGTGGCAGTGTTCAGCAGAATCTTGGCACCGTAGGCC 22816 Query 334323 AGAGAAAATTCACAATCACACAGATCCTCACC 334354 || || || | ||| | |||||| ||||| || Sbjct 22817 AGCGAGAACTGACAGTTACACAGGTCCTCGCC 22848 >seq195 Length=32421 Score = 87.8 bits (96), Expect = 4e-12 Identities = 231/347 (67%), Gaps = 8/347 (2%) Strand=Plus/Minus Query 298154 AAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATC 298213 ||||| |||| || || ||||| | ||||||| ||| |||||||||||||||| Sbjct 7839 AAGTTGATGATCAGGCCCTTGATGTGCGAGCCGTCAAAGTCCTGGTCGGTCATGATCATC 7780 Query 298214 ACATGACCGTAACGAAG--CGAGGACG-TGTCTTTGTACACTTTACCGGTTTGAAGGCCG 298270 | ||||| || || | |||| |||| ||| || || ||| || || ||| Sbjct 7779 AGGCTGCCGTACCGCAGTCCATCGACGCTGTC---GTAGACCTTGCCGTGCTGCAGCCCG 7723 Query 298271 AGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GATGCATC 298329 ||||| | |||| | |||| || |||||||| |||| || | | | || || || Sbjct 7722 AGAATCTCCTTGATGTGTTTGATCTCGGCGTTCTTCATGAT-CTGGTCGTGCGACGCCTC 7664 Query 298330 GCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCAC 298389 ||| ||||| | || || || || || |||||||| || || ||||| |||||| | Sbjct 7663 GCGCACATTGAGCAGCTTGCCGCGCAGCGGGAACACACCGTACGCATCGCGGCCGACCTC 7604 Query 298390 GGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCA 298449 | | || | | || || | | || || || ||||| || || ||||| ||||| Sbjct 7603 GCTGATGCCCGACACAGCGAGCGCCTTGGCCGAGTCGCCCTCGGTGAGGATGAGCGTGCA 7544 Query 298450 CATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGG 298496 | |||| ||||| || ||||| | || || | ||| |||| Sbjct 7543 CTCGGCGCTGCGCTTCGTGCCGGCCCAATTCGCGTCCTCGAGCTTGG 7497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876764081150