Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq102 107 2e-18 seq14 104 2e-17 seq27 96.9 3e-15 seq105 86.0 6e-12 >seq102 Length=51898 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| ||||||||||| ||||| ||||| || || ||| Sbjct 9026 ATACCACCACGCAGACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 8967 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || ||| |||| || || || || | |||| || || |||||||| Sbjct 8966 CTCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGA 8907 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || ||||| || |||| || | || | ||||| || || || Sbjct 8906 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGATTC 8848 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| ||| ||||| || || || ||||||||||||||||| Sbjct 8847 CACCTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCAT 8797 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || ||| ||||||||||| ||||| ||||| || || ||||| Sbjct 9251 CCACCACGCAGGCGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTCGCTC 9192 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||| || || || || | |||| || || |||||||| ||| Sbjct 9191 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 9132 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || |||| || | ||||| || || || || Sbjct 9131 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGATTCCACC 9072 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || ||| ||||| || || || || || || || ||||| Sbjct 9071 TCGAGGGGAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9025 >seq14 Length=25249 Score = 104 bits (114), Expect = 2e-17 Identities = 386/596 (65%), Gaps = 17/596 (3%) Strand=Plus/Plus Query 123923 TCAAGGGT-TGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAA 123981 || ||||| | ||||| ||||| | || || || |||| ||| ||| | || || Sbjct 7370 TCCAGGGTCTTGCCGATGCGTTCATGATCATGGGCTATCCGTTCGACAGCCAGGAGGCGC 7429 Query 123982 AGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCG 124041 |||| || |||||| ||| || || || | | || ||||| ||||||| Sbjct 7430 GCCTGCTGAACGTGCAAATCTTCGAGACCATCTACCATGCGGCCCTGGAGCGCAGCTGCG 7489 Query 124042 AACTTGC----GAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGA 124097 | || || ||| || ||| ||||||| | |||| ||||||||| || | Sbjct 7490 AGCTGGCTGCCGAATAT----GGCCCGTACGAGACGTACGAGGGCAGCCCCGCCTCGCAG 7545 Query 124098 GGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTT 124157 || | ||||||||||| ||||||| | ||||| | ||||||||||| | Sbjct 7546 GGCCTCCTGCAGTACGACCTGTGGAACCGCCCGCCGACGGACCTGTGGGACTGGGCCACG 7605 Query 124158 TTAAAACAACGCATATCGAC--GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGC 124215 | || |||| || | | ||||||| |||| ||||||||| || ||||| |||| Sbjct 7606 CTCAAGG--CGCAGATTGCCCAGCACGGTCTGCGGAACTCGCTGCTGATGGCGCCGATGC 7663 Query 124216 CGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACA 124275 ||||||| |||| || || | || |||||| | ||| ||||||| ||| | || Sbjct 7664 CGACGGCCTCCACGAGCCAGATCCTCGGCTTCAACGAGTGCTTTGAGCCGTACACGAGCA 7723 Query 124276 ATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGG 124335 | | ||| |||| || || | || ||||| || || ||| | || | || || Sbjct 7724 ACATTTACATGCGCCGTGTACTGGCGGGCGAGTTCCAGGTGGTCAACCCGTGGCTGCTGC 7783 Query 124336 ACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATG-CGCAACGAAATTATTGCGGCC 124394 ||| | || | | | | | | | || ||| |||| | ||||||||| | Sbjct 7784 GCGAGCTTGTCGAGCTGGGTCTCTGGAACGACTCGATGAAGCAA-AAGATTATTGCGCAC 7842 Query 124395 GGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACC 124454 || ||| | ||| ||| ||| ||||| || ||| ||||| || ||||| || Sbjct 7843 GGCGGCTCGATCCAGAACATTGCTGGCATTCCCGACCACATCAAGGCCCTCTACAAGACG 7902 Query 124455 GTGTGGGAAATGA-AAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGT 124509 |||||||| || | || | |||| ||||| ||||| | ||||| ||||||| Sbjct 7903 GTGTGGGAGATTAGCCAAAAGGTGATT-ATTGACATGGCTGCGGACCGTGGCGCGT 7957 >seq27 Length=62815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || ||||| ||||| || || ||||| | ||| | || || Sbjct 52881 CACGAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTC 52940 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | |||| || || |||||||| |||||||| || ||||| || Sbjct 52941 GAGCTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATCCTG 53000 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | ||||| ||||||||||| || || || | ||| || Sbjct 53001 GATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTT 53060 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 ||| || ||||| || || || |||||||| || Sbjct 53061 GCCAGTCAGAGTCTTGACGAAGATTTGCATGGC 53093 >seq105 Length=229645 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || ||| || |||||||| ||||| ||||| || || ||||| Sbjct 227312 CCACCACGCAGGCGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 227253 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || || || ||| | |||| || || |||||||| || Sbjct 227252 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 227193 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || || || || || | || | |||||||||||||| || Sbjct 227192 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACC 227133 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || ||||| || || || || || | |||||| Sbjct 227132 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAACACTTGCAT 227086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001906140840