Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq22 131 2e-25 seq105 127 2e-24 seq27 127 2e-24 seq102 122 1e-22 >seq22 Length=101165 Score = 131 bits (144), Expect = 2e-25 Identities = 177/246 (72%), Gaps = 28/246 (11%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||||| || || |||| || |||||||||||||||||||||||| | ||| ||| Sbjct 10449 AAACGCAGGACGAGGTGCAGCGTGCTCTCCTTTTGGATATTGTAGTCGCTCAAAGTACGC 10508 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || ||||||||||| || || |||| |||||||||||| | ||| | || |||| Sbjct 10509 CCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCC 10568 Query 46496 TTGTCCATGATCTTCTTCTTGA--GCGTCG----CC------------ACCGTG-TCGCT 46536 |||||| |||||| |||||| || ||| || ||| || ||| | Sbjct 10569 TTGTCCTGGATCTTGGTCTTGACTGCCTCGGTTACCATCGCCCCACGTACCATGCTCGAT 10628 Query 46537 CGATTC--------CACA-TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGAT 46587 ||| || | || |||| |||||| ||||| ||||||||||| || ||||| || Sbjct 10629 CGAGTCGCTGCTCTCGCACTCCAACGTGATCGTTTTCCCCGTCAGCGTCTTTACAAAAAT 10688 Query 46588 TTGCAT 46593 ||||| Sbjct 10689 CTGCAT 10694 >seq105 Length=229645 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||||| ||||| ||||||||| || ||||| | Sbjct 227300 CGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA 227241 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||| ||||| | || | | ||||||| Sbjct 227240 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTG 227181 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||||| || ||||| || | ||||| Sbjct 227180 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATC 227121 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || || || || | |||||| Sbjct 227120 GTCTTCCCGGTCAGGGTCTTGACGAACACTTGCAT 227086 >seq27 Length=62815 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||||| ||||| ||||||||| || ||||| |||| || Sbjct 52881 CACGAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTC 52940 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| || ||||| |||| ||||| ||||| | || | || |||||| ||| Sbjct 52941 GAGCTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATCCTG 53000 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| | | | |||||| || || || || | ||||| || || Sbjct 53001 GATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTT 53060 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||||||||| Sbjct 53061 GCCAGTCAGAGTCTTGACGAAGATTTGCAT 53090 >seq102 Length=51898 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||||| ||||||||||| ||||| ||||||||| ||||| || | Sbjct 9239 CGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCA 9180 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || || || |||| ||||| ||||| | || | || ||||||| Sbjct 9179 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTG 9120 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||||| | | | |||||| ||||||||| || | | || Sbjct 9119 TCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGATTCCACCTCGAGGGGAATC 9060 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || || ||||| ||||| Sbjct 9059 GTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236782005080