Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8 457 9e-124 seq105 134 1e-26 seq102 125 7e-24 seq27 125 7e-24 seq22 109 5e-19 >seq8 Length=40485 Score = 457 bits (506), Expect = 9e-124 Identities = 603/824 (73%), Gaps = 19/824 (2%) Strand=Plus/Minus Query 132627 CTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGC 132686 ||| ||||| || | || |||| | |||||| | |||||| || |||||||| || Sbjct 5504 CTCGAAAAAGTTCGACTTGCCCTGGAGCGAAATGTTCTCCATAAAGTCAAAGGGGTTCGC 5445 Query 132687 TGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 | |||||||||||||| |||||| ||| ||| ||||| | ||||||||| ||||| Sbjct 5444 CGAGTTGTAGTGCTTGGGGTTGCCGA---GGTTGACCAGCAGGCGGTCGGCCACAAACTC 5388 Query 132744 GATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGG 132802 ||||| || ||||| | ||| | | | || | ||| || ||||| || |||| Sbjct 5387 AATGTACTGGCACATGAGGCGCGCGTTCATG-CCGATCAGCGAGACGGGCAGGGCGTCGG 5329 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | | |||| ||||| ||||| || || ||||||| ||| | || || | || | Sbjct 5328 TCAAAAAGTCCTGCTCAATGGCCACGGCCTCGGTGATGATGCGGTTCAC-CGTGTCGGGG 5270 Query 132863 TCGGC-CGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921 | || || | | || || |||||| | ||| ||||||||| |||| |||||| Sbjct 5269 TGCGCGCGCTTCTTCAGGTGGCTGAACAAGAGGCAGGCAAAGTCGGTGTGCAGACCCTCG 5210 Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 || | || ||||| ||||| ||| | || ||| |||||||| ||||| || |||||| Sbjct 5209 TCACGCGAGATGAGCTCGTTCGAGAACGACAGGCCAGGCATGAGACCGCGCTTCTTGAGC 5150 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 ||||| |||| ||| || |||||| || |||| |||||||||||| || || || ||| Sbjct 5149 CAAAAGATGGAGGCAAACGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGGCGACC 5090 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101 |||||||| ||||| ||| ||| | ||||||||||| ||||| |||||||| Sbjct 5089 AGGCGCTCCGAGAACGAGGCGCGCTTGTCCGAGATCCAGCGCAAGGCCCACTCGGCCTTC 5030 Query 133102 TCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCT--TCCGAGG 133159 | |||||| || || || ||||||||||| | | | | | | | || ||||| Sbjct 5029 TGCTTGACGACAGGGATGGTCTCGATGGCGTT--AAAGAGGTATTCGCGCTGCTCCGACT 4972 Query 133160 AACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGA 133219 ||| | ||| ||||| |||||| ||| ||| | |||||||| | ||||||||| | Sbjct 4971 CACGGATGTACGTGTCAATGAGGAGCGAGTACGTCTCCGAGTGGATGTTCTCCATCATAA 4912 Query 133220 TTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCG 133278 | ||||||||||| ||||| || ||||| | ||||||| || | || ||| ||||| Sbjct 4911 TCTGAAAGCCGTAGAAGCAGCGGGCCTCAGCGGCCTGCACCTC-GGCGCTGAAGCGCTCC 4853 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||| ||| || || |||||||| || || | | Sbjct 4852 ACCAGGTTCTCGTTGACGATGCCGTCTGAGGCAGCAAAGAAGGCCAGGACATGGCTTACA 4793 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGC---GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 || |||||||| |||||||||| || | ||||||||| || |||||| ||||||||| Sbjct 4792 AAGTGGCGCTCATTGTCGTTCATGCGGTGGTCCCAGTCGTGCAGGTCCTTCGACAGGTCC 4733 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| ||||||| |||||||||||||| || |||||||| Sbjct 4732 ATCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACAT 4689 >seq105 Length=229645 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||| | ||||| || || || || || || || |||||| | || || ||| | || Sbjct 227086 ATGCAAGTGTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 227145 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| ||||| || ||| | |||||| Sbjct 227146 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 227205 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||||||||| |||||||| || | |||||||| | |||||||||| Sbjct 227206 CAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGAGCGACTACAAC 227265 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| |||||||| | |||||||| Sbjct 227266 ATCCAGAAGGAGAGC-ACGCTGCACCTCGTGCTGCG 227300 >seq102 Length=51898 Score = 125 bits (138), Expect = 7e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || ||||| || ||||| ||||| || || ||| |||| || || | | Sbjct 8796 AATGCAAATTTTTGTAAAGACCCTCACTGGCAAGACGATTACCCTCGAGGTGGAATCGTC 8855 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || || | ||||| ||||| ||||| | |||| Sbjct 8856 GGACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACC 8914 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | || || || |||||||| || | || || || | |||||||| Sbjct 8915 AACAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTGAGCGACTACA 8974 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||| ||||||||| | ||||||||| || | || || Sbjct 8975 ACATCCAGAAGGAGAGC-ACGCTGCATCTCGTGCTGCGTCTGCGTGGTGG 9023 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || || || |||| || || | | Sbjct 9025 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTCCCCTCGAGGTGGAATCGTCG 9084 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | || || | ||||| ||||| ||||| | ||||| Sbjct 9085 GACACGATTGACAATG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCA 9143 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || || || |||||||| || | || || || | ||||||||| Sbjct 9144 ACAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTGAGCGACTACAA 9203 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| ||||||||| | |||||||| || | || |||| Sbjct 9204 CATCCAGAAGGAGAGTACGCTGCATCTCGTGCTGCGCCTGCGTGGTGGCC 9253 >seq27 Length=62815 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || |||||| | || |||||| | | Sbjct 53090 ATGCAAATCTTCGTCAAGACTCTGACTGGCAAGACGATCACCCTTGAGGTCGAGTCTTCG 53031 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| || || ||||| ||||| | |||||| Sbjct 53030 GACACGATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGACCAA 52971 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || |||| |||||||| | |||||||||| Sbjct 52970 CAGCGTCTGATTTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAAC 52911 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| || ||||| | ||||| || Sbjct 52910 ATCCAGAAGGAGAGC-ACCCTGCACCTCGTGCTTCG 52876 >seq22 Length=101165 Score = 109 bits (120), Expect = 5e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| ||||| | ||||| ||||| || |||| |||||||| Sbjct 10582 AAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAGCAGCGCCTGATTTTTGCGGGCAAG 10523 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCA 38446 |||||||| || | ||| || | | ||||||||| ||||||||||| ||| |||||||| Sbjct 10522 CAGCTGGAGGATGGGCGTACTTTGAGCGACTACAATATCCAAAAGGAGAGC-ACGCTGCA 10464 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 | || ||||||||| | || || Sbjct 10463 CCTCGTCCTGCGTTTGCGCGGTGG 10440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171368255360