Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq97 158 4e-33 seq220 109 2e-18 seq14 105 2e-17 seq141 100 8e-16 >seq97 Length=125379 Score = 158 bits (174), Expect = 4e-33 Identities = 269/388 (69%), Gaps = 4/388 (1%) Strand=Plus/Plus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTC 302550 ||||| || || || ||||| | | ||| ||||| ||||| | || | || || Sbjct 2429 TCAATGCCATCCTCACCGTACGCAAACTCAATGACGTTGTTGGTAGAGTTGCGGACAGTG 2488 Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610 |||||||| ||| | | |||||||| | ||| | |||||||||||||| |||||| Sbjct 2489 CCATCATAACAAATGGTCACGTCTTCCAGAGCCTTCACCAAACGACGCTGAATGTAACCA 2548 Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || | || || ||||| || ||||| ||||| |||||||| ||||||| ||||| Sbjct 2549 GTCTCGGCCGTCTTCACAGCAGTGTCAATCAGACCCTCACGACCAGCCATAGCGTGGAAA 2608 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | || | || || || | | | | || ||||||| || ||||| || Sbjct 2609 AAGAATTCGTGCGCAGTGAGGCCTCGCAGATATGAATTCTCAACAAAGCCACGGCTTTCA 2668 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 |||| | |||| ||||||||| || ||||| ||| | ||||| | || ||| Sbjct 2669 GGCGTAAAGTCGTCCTTGGTAAAATGCGGCAGACTCCGATGGCGGAAGCCGAAAGGAATA 2728 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAAT 302848 ||||| || || || |||||| || | || | | ||||||||||||||| | ||| Sbjct 2729 CGCTTGCCTTCCACCGACTGCTGACCGACACAGGCAGACATCTGCGAAATATTGATGAAT 2788 Query 302849 CACTGCCCTTGGAGCCAGCATTTACCAT 302876 | |||||| ||||||||| ||||||| Sbjct 2789 GA--GCCCTTCGAGCCAGCAATTACCAT 2814 >seq220 Length=73957 Score = 109 bits (120), Expect = 2e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAG-AATTTTGTCTCGCAA 289084 |||||| | ||||||||||| || | |||||| | |||||| | ||||| | | || Sbjct 20741 TTTACCGATTGCATCAATTTCATCCACGAAAATGATACACGGTGCCATTTTCT-TGGCCG 20799 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 | ||||| | || | |||||| |||| |||| ||||||| |||| || |||||||||| Sbjct 20800 TAGCAAACATGTCGCGTACACGAGATGGACCAACACCAACAAACATCTCCACAAATTCAG 20859 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | || || | ||||| ||| |||||| || || ||| |||| | ||| | Sbjct 20860 AACCCGAGACAGAGAGGAATGGAACACCTGCTTCACCAGCAGTTGCTTTCGCAACAAGCG 20919 Query 289205 TCTTACCTGTTCCAGGTGGTCC 289226 |||||||||| || || || || Sbjct 20920 TCTTACCTGTACCCGGGGGGCC 20941 >seq14 Length=25249 Score = 105 bits (116), Expect = 2e-17 Identities = 579/919 (63%), Gaps = 13/919 (1%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCA 155645 |||| |||||||| || || || || ||||| | | || |||||| || | |||||| Sbjct 7195 CAATCGACGCCAGGTTGCACACAGCCGTCTCGTCCGGCGA-GCTGTACTCGATAATCTCC 7137 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||||||||| || |||||||| ||||| | ||||||||||| || | ||| Sbjct 7136 GTGCACAGGTTCGAGCTCTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCC 7077 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 | |||||||| || | | | ||| | || ||||| |||||||| || ||||| | Sbjct 7076 GAGTCCTTGTACAGGACGAAGGGGTTGCCCGTCTCGATCTGTGCCTCGAGAATGGCATAC 7017 Query 155766 CAGAGGTCACGGGCATT---AATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATA 155822 || || | | || || | ||||| | | ||| || ||| |||||| Sbjct 7016 CACAGCTTCTGCGCCTTGACAGAGCGCTTGGCG---CGGCCCTCGCGCTCGTATTTCTCG 6960 Query 155823 TACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAA 155882 || || | | || || || || || || ||| || ||||||| ||||||| Sbjct 6959 TAGAGAGCATCAAATTCTTCGCCATAGCAGTCGGCCAGGCCGGGGCACTCGGCGGGGCAC 6900 Query 155883 AACAGCGACCAAATTTTATTACCGAT-TACACGCTCCATAAATACATCACTCGCCCAAAT 155941 | |||||||| | | | | | | || || ||| || | ||| ||| | Sbjct 6899 ATCAGCGACC-AGTCGCCGTTCTGCTCGACGCGGCGCATGAACAAGTCAGGAATCCACAG 6841 Query 155942 AGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAA 156001 || ||| ||||| | || |||||| | ||||| || || || || || | Sbjct 6840 CGCCAGGAACAGGTCGCGCGCGCGCACCTCCTCCTTACCGTGGTTTTTGCGCAGATCAAT 6781 Query 156002 GAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCT 156058 ||| || | || | || |||||||| || || ||||| ||| | | | Sbjct 6780 GAACTCGAACACGTCCGAGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGACGCTT 6721 Query 156059 CTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAAT 156118 ||||||||||| || || || || || || || ||| | || | ||||| || | ||| Sbjct 6720 GTTGCCACCCTGGTCCACGTAGCGCGCTGTGTTGTTGTATACGCGGAGCATGGGCACAAT 6661 Query 156119 ACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAAT 156178 ||| ||| |||||| || ||| ||| | ||| || | || || | || || || Sbjct 6660 ACCGTTGCTCACGCCATTCGTACCGGCAATGTACGAGCCCGTTGCACGGATGTTGTGGAT 6601 Query 156179 ATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAA 156238 || || ||||||||||| | | || || ||||| ||| | || | | | Sbjct 6600 ATTCAGACCAATACCACCGGCCGTCTTGCTGATCATCGCGCACGTCTTGAGCGTGTCGTA 6541 Query 156239 AATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCG 156298 ||||| || ||||| || || | ||| | || |||| || | ||| || Sbjct 6540 GATACCCTCGATAGAGTCGTCCTTCATGCTCACAAGGAAGCAGGACGACATTTGGGGGTT 6481 Query 156299 TGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATA 156358 || || ||||| ||||| || || || | || || |||| ||| | ||||| || Sbjct 6480 GGGCGTGCCAGCATTGAACAGGGTCGGCGACGCGTGTGTAAAGGCCTTCTCGGACATGTA 6421 Query 156359 ATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCAT 156418 | ||||||||| | ||| | || ||||| || | | || ||| | ||| Sbjct 6420 GTTGTATGTCTCAATGGCGCTCTTCACATCCTCGCCGTGGATGCCCACAGCGACACGCAT 6361 Query 156419 CCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTC 156478 ||| ||||| || ||||| | | | |||| || ||||| ||||| | ||| || Sbjct 6360 GAGCATGTGCTGGGGGCGCTCCGCGACCTTGCCATTGATGCGCAGCAGGTAGGAGCGCTC 6301 Query 156479 CAGAGTTTTAAACCCGAAA 156497 ||| || || || |||||| Sbjct 6300 CAGCGTCTTGAAGCCGAAA 6282 >seq141 Length=109598 Score = 100 bits (110), Expect = 8e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 251487 ACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGC 251546 ||| || || |||||||| || |||||||| ||||||||||| |||||||| || || Sbjct 33538 ACCATGCGAGATCATACAGTCGCGCTCCATCTCACCGAAACGCAGACCACCGTCACGGCT 33479 Query 251547 CCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTG 251606 | |||||| ||||||| || ||||| | || |||||| | |||||| || Sbjct 33478 ACGACCCTCAACAGGCTGCCGCGTGAGGATCTGCACTGGACCGCGCGCGCGGCTGTGGAT 33419 Query 251607 CTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 ||| || | ||||| ||||| || ||||||||| | | ||||| Sbjct 33418 CTTGTCGTCCACCATGTGCTTCAGGCGCTGGTAGTACGTCGGACC 33374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813281595173