Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq102 113 9e-20 seq27 100 6e-16 >seq102 Length=51898 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || | ||||| || || ||||| || || || || Sbjct 9025 TACCACCACGCAGACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGC 8966 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || || || || || || ||||||||||| || | ||||| || |||| Sbjct 8965 TCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAG 8906 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| || || || || || ||||| || | ||| | Sbjct 8905 GAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGATTCCA 8846 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || ||||||||||| || | ||||||||||| || |||||| Sbjct 8845 CCTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATT 8796 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||| ||| || ||||| || || || || ||| | | || Sbjct 9239 CGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCA 9180 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | ||||| || ||||| || || ||||| Sbjct 9179 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTG 9120 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| |||||||| || | ||| || || | | ||| Sbjct 9119 TCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGATTCCACCTCGAGGGGAATC 9060 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 9059 GTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9025 >seq27 Length=62815 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || ||||| || || || || || | | |||| Sbjct 52876 CGAAGCACGAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCG 52935 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| || || || | ||||| || ||||| || || |||||| Sbjct 52936 TCCTCGAGCTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTA 52995 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || ||||| || || || || || | || ||| Sbjct 52996 TCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATC 53055 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || || ||||| Sbjct 53056 GTCTTGCCAGTCAGAGTCTTGACGAAGATTTGCAT 53090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824319257631