Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8 269 4e-66 seq14 165 1e-34 seq199 134 2e-25 seq194 131 2e-24 seq74 91.5 2e-12 >seq8 Length=40485 Score = 269 bits (298), Expect = 4e-66 Identities = 410/570 (72%), Gaps = 18/570 (3%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||||| || ||| | || || || || ||||| ||||||||||| Sbjct 4619 CGAGCCGCTGCTGAAGGAGAACAAGTCGCGTTTCGTGCTCTTCCCGATCCGCTACCACGA 4678 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||||||||||||| | |||| Sbjct 4679 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGATGGACC 4737 Query 1455835 TCGGCGCCG-ACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | || | | |||||| ||| ||| |||| | |||||||| || | Sbjct 4738 T-GTCGAAGGACCTGCACGACTGGGACCACCGCATGAACGACAATGAGCGCCACTTTGTA 4796 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 | || ||||| ||||| ||| || ||| || |||||||| ||||||||||| | Sbjct 4797 AGCCATGTCCTGGCCTTCTTT-GCTGCCTCAGACGGCATCGTCAACGAGAACCTGGTGGA 4855 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||||| | ||||| || | ||||| || | || ||||| || ||||| Sbjct 4856 GCGCTTCAGCGCCGAGGTGCAGGCCGCTGAGGCCCGCTGCTTCTACGGCTTTCAGATTAT 4915 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || || ||||||||||| || ||||| ||| || || | Sbjct 4916 GATGGAGAACATCCACTCGGAGACGTACTCGCTCCTCATTGACACGTACATCCGTGAGTC 4975 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAGG 1456129 || || || |||||||| ||||||||| || | || |||| | | | | |||| Sbjct 4976 GGAGCAGCGCGAATACCTCTTTAACGCCATCGAGACCATCCCTGTCG-TCAAGCAGAAGG 5034 Query 1456130 CCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||| ||||| || |||||| ||||| | |||||| || | ||||| || Sbjct 5035 CCGAGTGGGCCTTGCGCTGGATCTCGGACAAGC-GCGCCTCG----TTCTCGGAGCGCCT 5089 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 |||| ||||||||| |||||||||||||||||||||||| || | |||||||||| Sbjct 5090 GGTCGCCTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCGTTTGCCTCCATCTTTTG 5149 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||||| |||||||| || || Sbjct 5150 GCTCAAGAAGCGCGGTCTCATGCCTGGCCT 5179 Score = 167 bits (184), Expect = 3e-35 Identities = 193/255 (76%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||||||||| | || ||| | || ||| | | ||| | ||||| || || Sbjct 5289 ATCATCACCGAGGCCGTGGCCATTGAGCAGGACTTTTTGACCGACGCCCTGCCCGTCTCG 5348 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || |||||||||||||| | |||||||||||||||||||| ||| || |||||||||| Sbjct 5349 CTGATCGGCATGAACGCGCGC-CTCATGTGCCAGTACATTGAGTTT-GTGGCCGACCGCC 5406 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | |||||| | ||||||||| |||| ||||| || | ||| Sbjct 5407 TGCTGGTCAACCTCGGCAACCCC-AAGCACTACAACTCGGCGAACCCCTTTGACTTTATG 5465 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGG-CGAGTACGCC 1456761 ||| || |||||| |||||||| | |||||||||||||||||||||| ||| || ||| Sbjct 5466 GAGAACATTTCGCTCCAGGGCAAGTCGAACTTTTTCGAGCGCCGCGTGGCCGACTATGCC 5525 Query 1456762 AAGGCCGGCGTCACC 1456776 |||||||| ||| || Sbjct 5526 AAGGCCGGTGTCGCC 5540 >seq14 Length=25249 Score = 165 bits (182), Expect = 1e-34 Identities = 195/264 (74%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 ||| |||| || || || ||||| |||||||| ||| || | ||||| ||||| || Sbjct 6448 GCGTCGCCGACCCTGTTCAATGCTGGCACGCCCAACCCCCAAATGTCGTCCTGCTTCCTT 6507 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 || |||||||| ||| || |||||||| ||||| |||||||||||| ||||||| | Sbjct 6508 GTGAGCATGAAGGACGACTCTATCGAGGGTATCTACGACACGCTCAAGACGTGCGCGATG 6567 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||| |||| ||||||| || || ||| | ||||| | || || ||||| | Sbjct 6568 ATCAGCAAGACGGCCGGTGGTATTGGTCTGAATATCCACAACATCCGTGCAACGGGCTCG 6627 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || || || || ||| | |||||| ||||||||||||| ||||| | ||| Sbjct 6628 TACATTGCCGGTACGAATGGCGTGAGCAACGGTATTGTGCCCATGCTCCGCGTATACAAC 6687 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| ||||||||||| |||||| Sbjct 6688 AACACAGCGCGCTACGTGGACCAG 6711 Score = 138 bits (152), Expect = 2e-26 Identities = 321/483 (66%), Gaps = 14/483 (3%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||||||| ||||||||| ||||||||| | ||| | Sbjct 6712 GGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACTCGGACGTG 6771 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | | || || || |||||||| |||| ||| || | |||||||| Sbjct 6772 TTCGAGTTCATTGATCTGCGCAAAAACCACGGTAAGG-AGGAGGTGC-----GCGCGCGC 6825 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || || || | ||||||| ||| |||| ||||||||| | | | | || Sbjct 6826 GACCTGTTCCTGGCGCTGTGGATTCCTGACTTGTTCATGCGCCGCGTCGAGCAGAACGGC 6885 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 ||||||||||| | ||||| ||||| ||||||||| ||| |||||||||| | Sbjct 6886 GACTGGTCGCTGATGTGCCCCGCCGAGTGCCCCGGCCTGGCCGACTGCTATGGCGAAGAA 6945 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNC---GCGGACCGTCGTGCCC 262084 ||||| || ||||| ||| | ||| | ||| | | Sbjct 6946 TTTGATGCTCTCTACGAGAAATACGAGCGCGAGGGCCGCGCCAAGCGCTCTGTCAAG-GC 7004 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 ||| || || | |||| |||||| ||| ||| || |||||||| |||| |||| | | Sbjct 7005 GCA-GA-AGCTGTGGTATGCCATTCTCGAGGCACAGATCGAGACGGGCAACCCCTTCGTC 7062 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 | ||||||||| | | |||| | ||||||||| ||||||||||||| | | |||| Sbjct 7063 CTGTACAAGGACTCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACGATCA-AGAG 7121 Query 262205 -GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAA 262263 | ||||||||||| ||||| || ||| ||||| |||| | ||||||||| Sbjct 7122 CTCGAACCTGTGCACGGAGATTATCGAGTACAGCTCGCCGGACGAGACGGCTGTGTGCAA 7181 Query 262264 CCT 262266 ||| Sbjct 7182 CCT 7184 Score = 134 bits (148), Expect = 2e-25 Identities = 364/542 (67%), Gaps = 30/542 (6%) Strand=Plus/Plus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 |||||||||| | | || |||| | || ||||| || ||||| |||||| |||| Sbjct 7591 TGGGACTGGGCCACGCTCAAGGCGCAGATTGCCCAGCACGGTCTGCGGAACTCGCTGCTG 7650 Query 262939 GTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAG 262998 |||||| ||||| |||||| | ||| |||||||| ||| || |||| || ||| Sbjct 7651 ATGGCGCCGATGCCGACGGCCTCCACGAGCCAGATCCTCGGCTTCAACGAGTGCTTTGAG 7710 Query 262999 GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAAC 263058 |||||||||||| |||| |||||| || || ||||||| || ||||||||| Sbjct 7711 CCGTACACGAGCAACATTTACATGCGCCGTGTACTGGCGGGCGAGTTCCAGGTGGTCAAC 7770 Query 263059 C---GCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGG-ACG-CCCGACTTTCGCG 263113 | | | ||| | ||| | || | || || || ||| ||| | ||| | || Sbjct 7771 CCGTGGCTGCTGCGCGAGC---TTGTCGAGCTGGGTCTCTGGAACGACTCGA-TGAAGC- 7825 Query 263114 ACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCC 263172 | | | ||||| |||| | |||||| | ||| | ||| || | ||| || Sbjct 7826 AAAAGATTATTGC-GCACGGCGGCTCGATCCAGAACATTG-----CTGGCATTCCCGACC 7879 Query 263173 GATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT--GCCCAACCGGGTGACCATTGATA 263230 | ||||||| |||| |||||| ||||||||| | ||| || ||||| ||||| | Sbjct 7880 -ACATCAAGGCCCTCTACAAGACGGTGTGGGAGATTAGCCAAA--AGGTGATTATTGACA 7936 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 |||| || ||||| | | | ||| ||||||||| |||||| | |||| || Sbjct 7937 TGGCTGCGGACCGTGGCGCGTTTGTGTGCCAGAGCCAAAGCCTCAACATTCACCTGAGCG 7996 Query 263291 ACCCGAC----GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTC 263346 ||||| || | ||| | |||||||||||| || | ||| |||||| Sbjct 7997 CGCCGACCTTTGGTC---AGC-TTACGTCGATGCACTTTTACGGCTGGAAGAAGGGCCTC 8052 Query 263347 AAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 ||||| ||| |||||| ||||||| || || ||||| | || || || |||||||| Sbjct 8053 AAGACGGGCTCGTACTACTTGCGCACGCGTCCTGCTGCGCAGGCGATCCAGTTCACCGTG 8112 Query 263407 GA 263408 || Sbjct 8113 GA 8114 >seq199 Length=10002 Score = 134 bits (148), Expect = 2e-25 Identities = 347/508 (68%), Gaps = 33/508 (6%) Strand=Plus/Minus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 ||||||||| || || || | ||| || ||| ||| |||||| |||||| || Sbjct 6416 CTCCATCTCGCCGAGACGCAGGCCACCGTCGCGGCTGCGTCCCTCGGTCGGCTGGCGCGT 6357 Query 1600318 GAGCATCTGGACG-GGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCA 1600376 ||||| | | || |||||||| | || ||||| |||||||| ||| ||| ||| | Sbjct 6356 GAGCA-CGGCGCGCGGGCCGCGCGCGCGCGCGTGCATCTTGTCCATGACCATGTGCTTGA 6298 Query 1600377 GGGCCTGGTAGTAGACCGGCGCCGTAAAGATCA---ACGCCTCCATGGGCTCGCCGGT-G 1600432 | ||||||||||| ||| ||| |||| || ||||||| | ||||||||||| | Sbjct 6297 GCTTCTGGTAGTAGATCGG-GCC--AAAGTACACGTACGCCTCAAGTGGCTCGCCGGTCG 6241 Query 1600433 TGCGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTGGCGAGCCAACTCGGCG 1600492 ||| | | || | | || |||||| | | | | |||| | | | | Sbjct 6240 TGCCGCTCGTCAGGTAT-TCTTTGCCGCCGTAGTTGTAGCCGTTCTGCACGAGGATGCGC 6182 Query 1600493 GCGACATCGTCGACG-GTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCG 1600551 || | || |||||| | || ||||||||||| |||||||| || |||| || Sbjct 6181 GCCATGTCTTCGACGCGCGA-GCCGCCAAAGGCCGTGCCGTACTGCAGCGAGCCGTCAAT 6123 Query 1600552 GCAGGCCA-CCTTGCC---CAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACG 1600607 || || ||||||| ||| || ||| ||||||||||| | ||||||||||||| Sbjct 6122 -CACACCGGCCTTGCCGGCCAGCAG---CTCGATCATCTTGCCGACCGTCATGCGCGACG 6067 Query 1600608 GGATGGCGTGCGGGTTGATCACAATGTC-GGGCG--TGGCACCG-CCGCGAGGCGACCAG 1600663 ||| | |||| ||||| || | ||||| ||| | || || || ||| || | Sbjct 6066 GGAAGCCGTGGGGGTTCATAATGATGTCAGGGTGGATGCCATCGTCCGTGA-------AC 6014 Query 1600664 GGCATGTCCTCGGTGGAGCGCACGCTGCCCAC-GGTGCCCTTTTGGCCGTGGCGCGACGA 1600722 ||||||||||| ||| || || | | |||| |||||| |||||||||||||| || Sbjct 6013 GGCATGTCCTC-CTGGGGCACAATCAGGCCACACACGCCCTTCTGGCCGTGGCGCGAGGA 5955 Query 1600723 CAGTTTGTCGCCCACCTCGGGCTGGCGC 1600750 | |||||||||| ||||||| | ||| Sbjct 5954 GAACTTGTCGCCCAGCTCGGGCCGCCGC 5927 >seq194 Length=54590 Score = 131 bits (144), Expect = 2e-24 Identities = 175/240 (73%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| || |||||||||||||||||| || | | ||| Sbjct 49579 TACTCGACCTACATCTACCGTGTTCTCAAGCAGGTGCACCCCGACACTGGT-----ATC- 49526 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | |||||||| || | ||||| |||| ||||||| | Sbjct 49525 TCGAACAAGGCCATGGCCATTCTCAACTCGTTCGTGCAGGACATTTTCGAGCGCATCGCC 49466 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 ||||||||| ||| ||||| ||| ||||||| | ||| ||| |||| |||| Sbjct 49465 ACCGAGGCC--TCGAAGCTGGCCAGCTACAACAAGAAGAGCACCATCTCTTCGCGTGAGA 49408 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 |||||||||| || || |||||| | | ||| || ||| | | ||||||| | |||||| Sbjct 49407 TCCAGACCGCTGTTCGTCTGATCCTTCCCGGTGAGCTGTCGAAGCACGCCATTGCCGAGG 49348 >seq74 Length=158587 Score = 91.5 bits (100), Expect = 2e-12 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 332809 TACCTTTTCGGCGGCGACAATCTCGCGCAGGCGAC-CGGCGATTTGGGCGTCAGTGAGGC 332867 ||||||||| || || |||||| ||||||| | | || | | |||| || | || Sbjct 152094 TACCTTTTCCGCCTCGCAGATCTCGAGCAGGCGGCGCAGC-ACCTCCTCGTCGGTCACGC 152036 Query 332868 GCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGT 332927 | | || || ||||| ||||| || ||||| | | ||| |||| | | |||| || Sbjct 152035 GGCCGAACCGGAGGATCGCACACCGACTCTGGATCGGCTCAATGATCTTGTTCGACTGGT 151976 Query 332928 TGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCC 332986 |||| || | | || ||||||||| | | | |||||||| |||| | || ||| Sbjct 151975 TGCACGCGAAGCAGAAGCGCGTCGTAGGCGCGTAGATCTCCATGGTGCGAC-GCAGCGCC 151917 Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCG 333042 || || || | ||||| | || ||| ||||||||||| ||||| |||||||| || Sbjct 151916 TGCTGTGCACCTGGCGTCATGCTGTCCGCCTCGTCGAGAATGATAATCTTGTGCCG 151861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177789112529098