Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq102 140 3e-28 seq105 125 6e-24 seq27 122 8e-23 seq22 114 1e-20 >seq102 Length=51898 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | ||| | |||||||||||| || |||||||| ||| | Sbjct 9251 CCACCACGCAGGCGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTCGCTC 9192 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| ||||| |||| ||||| ||||||| |||| Sbjct 9191 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 9132 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| ||||| ||| | | | | | |||||| |||||||||| Sbjct 9131 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGATTCCACC 9072 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | | ||||| || || || | || || || || |||||||| Sbjct 9071 TCGAGGGGAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9025 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | ||| | ||| |||||||| || |||||||| ||| | Sbjct 9023 CCACCACGCAGACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 8964 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| ||||| |||| ||||| ||||||| |||| Sbjct 8963 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 8904 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| ||||| ||| | |||| | | |||||| ||||||||| Sbjct 8903 ATACCCTCCTTGTCCTGAATCTTGGCCTTGAC-GTTGTCGATCGTGTCCGACGATTCCAC 8845 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||| | || ||||| || || || | || || ||||| || |||||| || Sbjct 8844 CTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATTGTG 8793 >seq105 Length=229645 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | || | ||| |||||||| || |||||||| ||| | Sbjct 227312 CCACCACGCAGGCGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 227253 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| ||||| || |||| ||||| ||||||| || Sbjct 227252 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 227193 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||||| | | | | ||||||| || |||||| Sbjct 227192 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACC 227133 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||||| || || |||| || || || || | ||||| Sbjct 227132 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAACACTTGCAT 227086 >seq27 Length=62815 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| ||| || ||| || |||| || ||||||||||| Sbjct 52894 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTACCA 52953 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || |||| ||||| ||||||| ||||| || |||||| ||| |||||| ||| Sbjct 52954 GCGAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTG 53013 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||| || || ||||| | |||||||| || || |||| ||| Sbjct 53014 ACATTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTGCCAGTCAGAGTC 53073 Query 35720 TTCACAAATATCTGCAT 35736 || || || || ||||| Sbjct 53074 TTGACGAAGATTTGCAT 53090 >seq22 Length=101165 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | || || | || | ||| ||||||||||| || ||||| ||| | Sbjct 10440 CCACCGCGCAAACGCAGGACGAGGTGCAGCGTGCTCTCCTTTTGGATATTGTAGTCGCTC 10499 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || ||| | || ||||||||||| |||||||| |||| ||||||||||||| ||| Sbjct 10500 AAAGTACGCCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGCGGA 10559 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | || |||||||||| |||||| Sbjct 10560 ATGCCCTCCTTGTCCTGGATCTT 10582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792309603320