Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 6e-14 seq14 89.7 7e-13 >seq8 Length=40485 Score = 93.3 bits (102), Expect = 6e-14 Identities = 365/571 (64%), Gaps = 10/571 (2%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | |||||| ||||| || || ||||| || | || | ||||| || Sbjct 5245 AACAAGAGGCAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTCGAG 5186 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || | || |||||||| ||||| ||||| ||||||||||| |||| ||||| || || Sbjct 5185 AACGACAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCC 5126 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || || |||||||| || || || ||||| || || || | ||| | ||| | | Sbjct 5125 GAGAAAAAGATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTC-CGAGAACGAGGCGCG 5067 Query 39788 TTATGT-----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | ||| ||||| | ||||| || || |||| ||| || ||| || || | Sbjct 5066 CT-TGTCCGAGATCCAGCGCAAGGCCCACTCGGCCTTCTGCTTGACGACAGGGATGGTCT 5008 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | || || |||||||| || | | || || | || || || || | | Sbjct 5007 CGATGGCGTTAAAGAGGTATTCGCGCTGCTCCGACTCACGGATGTACGTGTCAATGAGGA 4948 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 | ||| | || || |||||||| || ||| |||||||| ||||| || || | | Sbjct 4947 GCGAGTACGTCTCCGAGTGGATGTTCTCCATCATAATCTGAAAGCCGTAGAAGCAGCGGG 4888 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 | |||| || ||||| | | || | ||| ||| || || || || || || | Sbjct 4887 CCTCAGCGGCCTGCACCTCGGCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATGCCGT 4828 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA--- 40079 | || ||||| || |||| ||||| | | ||| | |||| | ||| Sbjct 4827 CTGAGGCAGCAAAGAAGGCCAGGACATGGCTTACAAAGTGGCGCTCATTGTCGTTCATGC 4768 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 | | |||||| | | || || || | || | || || || ||||| ||||||| Sbjct 4767 GGTGGTCCCAGTCGTGCAGGTCCTTCGACAGGTCCATCTCCTCGGCGGTCCAGAACGACG 4708 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATATATC 40170 |||| ||||| |||||||| | ||| || || Sbjct 4707 CCTCGGCCTTCTTGTACATCTGCCAGATCTC 4677 >seq14 Length=25249 Score = 89.7 bits (98), Expect = 7e-13 Identities = 348/539 (65%), Gaps = 6/539 (1%) Strand=Plus/Minus Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738 ||||| | ||||| | | || || ||||| || || || || || || | | | || Sbjct 6788 AGATCAATGAACTCGAACACGTCCGAGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCG 6729 Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798 || || || || || ||||| || | ||| | || ||||| || || || | ||||| Sbjct 6728 GGACGCTTGTTGCCACCCTGGTCCACGTAGCGCGCTGTGTTGTTGTATACGCGGAGCATG 6669 Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATA 69858 || | |||||| || ||||| || || | ||| || || |||| || || Sbjct 6668 GGCACAATACCGTTGCTCACGCCATTCGTACCGGCAATGTACGAGCCCGTTGCACGGATG 6609 Query 69859 TTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT-TTCAA 69917 || ||| ||||| || || || ||| | || ||| | || || ||| || | Sbjct 6608 TTGTGGATATTCAGACCAATACCACCGGCCGTCTTGCTGATCATCGCGCA-CGTCTTGAG 6550 Query 69918 TGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACAT 69977 ||||| || |||||||| || || || ||||| | | ||| || ||| ||||| Sbjct 6549 CGTGTCGTAGATACCCTCGATAGAGTCGTCCTTCATGCTCACAAGGAAGCAGGACGACAT 6490 Query 69978 TTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTC 70037 ||| | | || || ||||| || | || || || ||||| || || || || Sbjct 6489 TTGGGGGTTGGGCGTGCCAGCATTGAACAGGGTCGGCGACGCGTGTGTAAAGGCCTTCTC 6430 Query 70038 AGAAA-GCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATC 70095 || | | || |||||||| ||||| || | | |||| | | | || || || | Sbjct 6429 GGACATGTAG-TTGTATGTCTCAATGGCGCTCTTCACATCCTCGCCG-TGGATGCCCACA 6372 Query 70096 GCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGG 70155 ||||||||||| | ||| ||||| || || || | || ||| || || |||| Sbjct 6371 GCGACACGCATGAGCATGTGCTGGGGGCGCTCCGCGACCTTGCCATTGATGCGCAGCAGG 6312 Query 70156 TATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT 70214 || || ||||| || || || || ||| ||||||| |||||| | |||||||| Sbjct 6311 TAGGAGCGCTCCAGCGTCTTGAAGCCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAAAT 6253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906833723560