Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq78 197 4e-45 seq102 131 5e-25 >seq78 Length=277669 Score = 197 bits (218), Expect = 4e-45 Identities = 473/708 (67%), Gaps = 17/708 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || || || ||||| || || |||||||| ||||| ||||| || || ||| Sbjct 144228 GCTGTTGGTATTGACTTGGGTACCACCTACTCTTGTGTGGCTGTCTGGCAGAACGACCGT 144169 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| ||||| || |||||| | || || || || |||||||| || ||| Sbjct 144168 GTTGAGGTCATTGCCAATGACCAGGGTAACCGTACGACTCCCTCGTACGTTGCCTTCACC 144109 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||| ||||| | || || || || | || || || | || Sbjct 144108 GACACGGAGCGTCTGATCGGTGACGCCGCCAAGAACCAGGTGGCCATGAACCCCCACAAC 144049 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGAC----AAATCTACAC 349433 || || ||||| || ||||| || ||||| | ||||| | ||| | || | Sbjct 144048 ACTGTCTTTGACGCCAAGCGTCTGATTGGCCGCAAGTTCAAC-GACGCTGAGGTC----C 143994 Query 349434 AATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTA 349493 | || || | || || | || || | || || | | | | | || || | | Sbjct 143993 AGTCGGACATGAAGCACTGGCCCTTCTCGGTCGT--CGACCGCTCGGGC-AAGCCTGTCA 143937 Query 349494 TTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTAC--CCGAAGAAATTTCATCAAT 349551 | || || || || ||||| | || || || || |||| |||||||| || || Sbjct 143936 TCCGCGTCGAGTACAAGGGTGAGGAGAAG--ATCTTCACTCCCGAGGAAATTTCGTCGAT 143879 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 |||| | | || ||| || | || || || || | || || | || || Sbjct 143878 GGTTCTGCTCAAGATGCGTGAGACCGCCGAGGCCTACCTTGGCTCGGATGTGAAGGACGC 143819 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 || | ||||| || ||||| || || || | |||||| || || || || ||||| Sbjct 143818 CGTGGTCACTGTCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGCTGG 143759 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 |||||| || | |||||| | | || ||||| || ||||||||||| || ||||| Sbjct 143758 TGTCATTGCCGGCCTGAATGTTATGCGTATCATTAACGAGCCCACTGCTGCTGCCATTGC 143699 Query 349732 ATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791 || || || || || | | ||| || || || | || || || || | ||||| Sbjct 143698 CTACGGTCTCGACAAGAAGGACGACACTGAGAAGAACGTCCTGATCTTCGACCTGGGTGG 143639 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 |||||| |||||||| || || || || |||| ||||| || ||||| || || || || Sbjct 143638 TGGTACCTTTGATGTGTCGCTTCTGACCATTGAGGAGGGTATCTTTGAGGTGAAGGCCAC 143579 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 |||||||| || || |||||||| || || ||||| || || ||||| Sbjct 143578 CGCTGGTGACACGCACCTTGGTGGTGAGGACTTTGACAACCGCCTCGT 143531 >seq102 Length=51898 Score = 131 bits (144), Expect = 5e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || ||| || || || || || || Sbjct 9027 CATACCACCACGCAGACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTC 8968 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| ||||| || || || || Sbjct 8967 GCTCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGG 8908 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || || || || || || |||| || || | ||| Sbjct 8907 AGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGATTC 8848 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || |||| ||||| || || || || ||||||||||| |||||| Sbjct 8847 CACCTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATT 8796 Score = 122 bits (134), Expect = 3e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || ||||| || ||| ||| || || || || || || Sbjct 9251 CCACCACGCAGGCGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTCGCTC 9192 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || || || || ||||||||||| ||||| || || || |||||| Sbjct 9191 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGA 9132 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || |||||||| || || || ||||| ||||||| || || | ||| || Sbjct 9131 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGATTCCACC 9072 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || ||||| || || || || || || || |||||||| Sbjct 9071 TCGAGGGGAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249954148887