Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq105 161 2e-34 seq102 154 3e-32 seq27 134 3e-26 seq22 100 7e-16 >seq105 Length=229645 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || || ||||| | ||||| Sbjct 227297 AGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCC 227238 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| |||||||| || || | || ||||||||| Sbjct 227237 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCC 227178 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| || || ||||| || ||||||||| Sbjct 227177 TGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 227118 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || ||||| ||||| Sbjct 227117 TTCCCGGTCAGGGTCTTGACGAACACTTGCAT 227086 >seq102 Length=51898 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || ||| ||| || |||||||| || || || || | ||||| Sbjct 9008 AGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCC 8949 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || |||||||| ||||||| || ||||||||| Sbjct 8948 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 8889 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| || ||| |||||||| || |||||| Sbjct 8888 TGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGATTCCACCTCGAGGGTAATCGTC 8829 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| ||||||||||| | |||||| Sbjct 8828 TTGCCAGTGAGGGTCTTTACAAAAATTTGCATT 8796 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||| || |||||||| || || || || | ||||| ||||||||||| || || || Sbjct 9216 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAA 9157 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 ||| || || |||||||| ||||||| || ||||||||||| ||||| || || || Sbjct 9156 GATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 9097 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || || ||||| || ||| |||||||| | |||||||| || ||||| ||||| || Sbjct 9096 GTCAATCGTGTCCGACGATTCCACCTCGAGGGGAATCGTCTTGCCAGTGAGGGTCTTGAC 9037 Query 211103 AAACACCTGCAT 211114 || | |||||| Sbjct 9036 GAAGATCTGCAT 9025 >seq27 Length=62815 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || || ||||| | || || Sbjct 52879 AGCACGAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCC 52938 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || || || |||||||| ||||||| || ||||| ||| Sbjct 52939 TCGAGCTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATCC 52998 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| ||||| || || ||||| || ||||||||| Sbjct 52999 TGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTC 53058 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 53059 TTGCCAGTCAGAGTCTTGACGAAGATTTGCAT 53090 >seq22 Length=101165 Score = 100 bits (110), Expect = 7e-16 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 ||||| ||||| || ||| ||| |||||||| || || || | ||| | | | ||||| Sbjct 10455 AGGACGAGGTGCAGCGTGCTCTCCTTTTGGATATTGTAGTCGCTCAAAG-TACGCCCATC 10513 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||||| || || || ||||| || ||||| || |||| || |||||||| Sbjct 10514 CTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTC 10573 Query 211022 CTGGATCTT 211030 ||||||||| Sbjct 10574 CTGGATCTT 10582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148598975585