Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq8 116 3e-21 >seq8 Length=40485 Score = 116 bits (128), Expect = 3e-21 Identities = 529/829 (64%), Gaps = 31/829 (4%) Strand=Plus/Minus Query 4281 TCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTT 4340 ||||| || || | ||||| | | |||||| || |||||||| ||||| || || | Sbjct 5503 TCGAAAAAGTTCGACTTGCCCTGGAGCGAAATGTTCTCCATAAAGTCAAAGGGGTTCGCC 5444 Query 4341 GCGTTGTAATGTTT----TTCACACTTTAGAGCT--ACAAGCAATCGGTCAGCTACAAAT 4394 | |||||| || || || | ||| | || |||| ||||| || ||||| Sbjct 5443 GAGTTGTAGTGCTTGGGGTTGCC------GAGGTTGACCAGCAGGCGGTCGGCCACAAAC 5390 Query 4395 TCTATATACTGGCTCATGAGTT-CGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTA 4453 || || ||||||| |||||| ||| ||| || || || | || || || |||| Sbjct 5389 TCAATGTACTGGCACATGAGGCGCGC-GTTCATGCCGATCAGCGAGACGGGCAGGGCGTC 5331 Query 4454 TGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT-- 4511 |||||||| || || || || | ||||| || ||||| || || | | || Sbjct 5330 GGTCAAAAAGTCCTGCTCAATGGCCACGGCCTCGGTGATGATGCGGTTCACCGTGTCGGG 5271 Query 4512 -TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | | | || || | || | ||||| | || ||||| || |||| ||| Sbjct 5270 GTGCGCGCGCTTCTTCAG---GTGGCTGAACAAGAGGCAGGCAAAGTCGGTGTGCAGACC 5214 Query 4571 TTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 ||||| | || | || || ||||| || |||| | || ||||| | ||| | ||| | Sbjct 5213 CTCGTCAC-GCGAGATGAGCTCGTTCGAGAACGACAGGCCAGGCATGAGACCGCGCTTCT 5155 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||| || | |||||| || || || || || ||||| || ||||||||||| | Sbjct 5154 TGAGCCAAAAGATGGAGGCAAACGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGG 5095 Query 4690 CTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 | || | || | ||||||| | ||||| ||||| || ||||| | | Sbjct 5094 CGACCAGGCGCTCCGAGAACGAGGCGCGCTTGTCCGAGATCCAGCGCAAGGCCCACTCGG 5035 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAA 4806 | || | ||| ||| || || || | || |||||||| | ||| | | || Sbjct 5034 CCTTCTGCTTGACGACAGGGATGGTCTCGATGGCGTTAAAGAGGTATTCGCGCTGCTC-- 4977 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 | || | || || ||||| || || || ||| | || || || || || || | Sbjct 4976 -CGACTCACGGATGTACGTGTCAATGAGGAGCGAGTACGTCTCCGAGTGGATGTTCTCCA 4918 Query 4867 TAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 | ||||||||| ||||| ||||| | || || | | || || ||| | || | Sbjct 4917 TCATAATCTGAAAGCCGTAGAAGCAGCGGGCCTCAGCGGCCTGCACCTCGGCGCTGAAGC 4858 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 || || | ||| ||||| || || ||||| ||| ||||| || |||| ||||| Sbjct 4857 GCTCCACCAGGTTCTCGTTGACGATGCCGTCTGAGGCAGCAAAGAAGGCCAGGACATGGC 4798 Query 4987 ATATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTA 5043 || ||||| || | ||| | | | | | ||||| | ||| || || | | Sbjct 4797 TTACAAAGTGGCGCTCATTGTCGTTCATGCGGTGGTCCCAGTCGTGCAGGTCCTTCGACA 4738 Query 5044 AATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 || | || || | ||||| |||||||| || || || |||||||| Sbjct 4737 GGTCCATCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACAT 4689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048408131257