Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq102 150 4e-31 seq105 123 6e-23 seq27 120 7e-22 >seq102 Length=51898 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || ||||| || || ||||| ||||||||||||||| || ||| Sbjct 8800 CAAATTTTTGTAAAGACCCTCACTGGCAAGACGATTACCCTCGAGGTGGAATCGTCGGAC 8859 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || ||||||||||| || Sbjct 8860 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAG 8919 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | ||||| ||| || ||| || Sbjct 8920 CGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTGAGCGACTACAACATC 8979 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || |||||||| || Sbjct 8980 CAGAAGGAGAGCACGCTGCATCTCGT 9005 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||| |||||||||||||| || ||| Sbjct 9028 CAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTCCCCTCGAGGTGGAATCGTCGGAC 9087 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || ||||||||||| || Sbjct 9088 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACAG 9147 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | ||||| ||| || ||| || Sbjct 9148 CGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTGAGCGACTACAACATC 9207 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || |||||||| || Sbjct 9208 CAGAAGGAGAGTACGCTGCATCTCGT 9233 >seq105 Length=229645 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| | ||||| || || || || || || ||||||||||| |||||||| || ||| Sbjct 227089 CAAGTGTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 227148 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || || ||||| |||||||| || Sbjct 227149 ACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAG 227208 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | || || ||| || ||| || Sbjct 227209 CGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGAGCGACTACAACATC 227268 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 227269 CAGAAGGAGAGCACGCTGCACCTCGT 227294 >seq27 Length=62815 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || ||||||||||| ||||| || || ||| Sbjct 53087 CAAATCTTCGTCAAGACTCTGACTGGCAAGACGATCACCCTTGAGGTCGAGTCTTCGGAC 53028 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| ||||| || || || || ||||||||||| || Sbjct 53027 ACGATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGACCAACAG 52968 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| || || | || || ||| || ||| || Sbjct 52967 CGTCTGATTTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAACATC 52908 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 52907 CAGAAGGAGAGCACCCTGCACCTCGT 52882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727668177426