Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq40 113 5e-20 >seq40 Length=46956 Score = 113 bits (124), Expect = 5e-20 Identities = 430/667 (64%), Gaps = 6/667 (1%) Strand=Plus/Plus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | |||||| ||| ||| | || || || ||||| || |||||||| ||| Sbjct 30670 GGGCACATGAGCGACCAGTCTTCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATC 30729 Query 54056 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 54114 || || || ||| || || || | || | ||||| || || ||||| || Sbjct 30730 CAGAGCGC-ATAGAACAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAG 30788 Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 ||||| |||| | | | |||| ||||| || || | ||| | | | | || || Sbjct 30789 ATCGATGAACTCAAACACGTCAGCGTGCCAGGGCTCGAGGTAGACAGCAAAGGCACCGGG 30848 Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 || ||||| || ||||| || | ||| | || ||||| || || || | | ||| || Sbjct 30849 GCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCAGTGTTGTTGTACACGCGGAGCATGGG 30908 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 | ||| || ||| | || || || |||| || || ||| ||||||| || Sbjct 30909 CACAATGCCGTTGCTCACGCCGTTCGTGCCGGCAATGTACGAGCCAGTGGCACGGATGC- 30967 Query 54295 ACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353 | | || | ||||| || || || ||| | || ||| | ||||| || | | Sbjct 30968 AGTGGATGTTGAGACCAATGCCACCCGCCGTCTTGCTGATCATGGCGCAGGTCTTGAGTG 31027 Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413 | || ||||||||||| || || ||| ||||| | || || || ||||| | Sbjct 31028 TGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGCACACGAGGAAGCACGACGACATCT 31087 Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473 | | || || || || || | || || || || || ||||| || || | Sbjct 31088 GCGGGTTCGGGGTGCCTGCGTTGAAGAGAGTGGGCGACGCATGAGTAAAGGCCTTCTCCG 31147 Query 54474 AAA-GTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532 | | |||| ||||||||||| || || | || || ||| | || || || || ||| Sbjct 31148 ACATGTAG-TTGTACGTCTCAATCGCGGCCTCAATGTCCGAGCCGTGGATGCCGACGGCG 31206 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 |||||||| | ||||||||| || | || | | |||| ||| || ||||| || Sbjct 31207 ACACGCATGAGCATGTGCTGGGGGCGCTCGGCAACCTTGCCGTTAATGCGCAGCAGATAA 31266 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 54652 || || | ||| || ||||| ||| ||||||| |||||| || ||||| || || Sbjct 31267 GAGCGCTCAAGAGTCTTGAAACCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAGATGATG 31326 Query 54653 ACTGAGT 54659 | |||| Sbjct 31327 GCCGAGT 31333 Score = 102 bits (112), Expect = 1e-16 Identities = 297/456 (65%), Gaps = 5/456 (1%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || ||||| || || ||| || |||||||| | || | ||||| || Sbjct 42179 AACAGCAGGCATGCAAAGTCAGTGTGCAGTCCCTCGTCCCGCGAGATCAGCTCGTTCGAG 42120 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 |||| || || ||||| ||||||||||| || |||||||| || |||||||| ||||| Sbjct 42119 AACGACAGACCAGGCATCAGGCCACGCTTCTTCAGCCAAAAGATCGACGCAAACGATCCG 42060 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA----CCGGC 24301 |||||||| || || || || ||||| || || | || | || | | || || Sbjct 42059 GAAAAGAAGATGCCCTCCACGGCCGCGAACGCCACCAGGCGCTC-CGAGAAGCTCGCGCG 42001 Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 || ||| | |||||| | ||||| || |||||||| || || || || ||||| Sbjct 42000 GCGGTCGTTGATCCACCGCAGCGCCCACTCCGCCTTCTTCTTCACCACCGGGATCGTCTC 41941 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || | ||| || || | | | || | ||| || || |||| || Sbjct 41940 GATCGCGTCAAACAGGTACTCGCGCTGCTCGGGCTCGCGGATATACGTGTCGATCAGCAG 41881 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||| | ||||| || || || || || || || || |||||||| || | || Sbjct 41880 CGAGTACGTCTCCGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGC 41821 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 ||||| ||| || || | | || || || | || || ||||| || ||||| Sbjct 41820 CTCGGCGGCCTGCACCTCGGTCGAGAAGCGCTCCAGCAGGTTCTCGTTCACAATGCCGTC 41761 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 || ||||| ||||||| ||||| | ||||| Sbjct 41760 CGACGCGGCAAAGAACGCCAGCACATGGCTGATAAA 41725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721035964480