Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq39 114 1e-20 seq58 107 2e-18 seq2 96.9 4e-15 seq75 87.8 2e-12 >seq39 Length=522589 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | ||||||||||| || || ||||| ||| |||||| || | Sbjct 30017 ACGGAGCACGAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGAGTACGACC 29958 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||||||||| || || || || ||||| ||||| | || | | |||||| Sbjct 29957 GTCCTCCAGCTGCTTACCGGCAAAGATAAGACGCTGTTGGTCCGGGGGGATACCCTCCTT 29898 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||| |||||| || || | ||||| Sbjct 29897 GTCCTGGATCTTGCTCTTGACGTTTTCGATCGTGTCAGACGATTCGACTTCCAGAGTGAT 29838 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| ||||||| ||||| Sbjct 29837 CGTCTTGCCAGTGAGGGTCTTGACAAAGACCTGCAT 29802 Score = 109 bits (120), Expect = 6e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || || || || |||| || |||||||| || Sbjct 29770 GTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCG 29711 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || ||||| ||||| | || | || |||||||||| ||| || ||| Sbjct 29710 GCAAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 29651 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | ||||| || || || |||| |||||| || || || || || || Sbjct 29650 A-CGTTGTCGATTGTGTCCGAGGACTCGACTTCGAGCGTGATAGTCTTTCCAGTAAGAGT 29592 Query 43166 CTTTACAAAGATTTGCATT 43184 ||||||||||||||||||| Sbjct 29591 CTTTACAAAGATTTGCATT 29573 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| ||| |||||| || |||| || |||||||| || Sbjct 30454 GTGCTCTCCTTCTGGATGTTGTAGTCACTCAGAGTACGGCCGTCCTCCAGCTGCTTGCCG 30395 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || ||||| ||||| | || | | |||||||||| ||| || ||| Sbjct 30394 GCAAAGATAAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTG 30335 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | |||||| || || || |||| |||||| || ||||| || || ||| Sbjct 30334 ACGTTTTCGATCGTGTCCGAGGACTCAACTTCGAGCGTGATAGTCTTGCCAGTAAGGGTC 30275 Query 43167 TTTACAAAGATTTGCAT 43183 || ||||||| ||||| Sbjct 30274 TTGACAAAGACCTGCAT 30258 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || || || || |||| || |||||||| || Sbjct 30226 GTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCG 30167 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || ||||| ||||| | || | || |||||||||| ||| || ||| Sbjct 30166 GCAAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 30107 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||| || || || |||| |||||| || ||||| || || ||| Sbjct 30106 ACGTTTTCGATTGTGTCCGAGGACTCGACTTCGAGCGTGATAGTCTTGCCAGTAAGGGTC 30047 Query 43167 TTTACAAAGATTTGCAT 43183 || || || | ||||| Sbjct 30046 TTGACGAACACCTGCAT 30030 >seq58 Length=446738 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || ||||| || |||| || |||||||| || Sbjct 376236 GTGCTCTCCTTCTGGATGTTGTAGTCGCTAAGAGTGCGACCGTCCTCGAGCTGCTTGCCG 376177 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| || | ||||| ||||| | || | | |||||||||| ||| | || | || Sbjct 376176 GCGAAAATCAACCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC-TGAATCTTAGACTT 376118 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | ||||||| |||| || || || | ||||| || |||||||| || || Sbjct 376117 GACGATGTCGATCGTGTCGTTCGACTCGACCTCAAGAGTGATCGTCTTGCCCGTGAGTGT 376058 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||| ||||| Sbjct 376057 CTTGACGAAGATCTGCAT 376040 >seq2 Length=94478 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | ||||||||||| || || ||||| || || || || | Sbjct 13089 ACGCAGCACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGGCC 13148 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || ||||| ||||| | || | | |||||| Sbjct 13149 ATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTT 13208 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| ||| |||| || | | |||||| || ||||| || | ||||| Sbjct 13209 GTCCTGGATCTTTCCCTTGACGTTCTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGAT 13268 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || ||||| || |||| |||||| Sbjct 13269 AGTCTTCCCCGTGAGGGTCTTGACGAAGACTTGCAT 13304 >seq75 Length=115788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | ||||||||||| || ||||| || ||| || || || | Sbjct 54559 ACGGAGCACTAGATGGAGCGTGCTCTCCTTCTGGATATTATAGTCACTGAGGGTGCGGCC 54618 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || ||||| ||||| || || || || || ||||| || || | || | || |||||| Sbjct 54619 ATCCTCTAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGATCCGGGGGAATGCCCTCCTT 54678 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | || ||| || || || |||| ||||| Sbjct 54679 GTCCTGGATCTTGCTCTTGACGATGTCAATGGTATCGGAGGACTCGACCTCGAGAGTGAT 54738 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| ||||||| ||||| Sbjct 54739 TGTCTTGCCGGTAAGAGTCTTGACAAAGACCTGCAT 54774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817056773280