Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq58 113 3e-20 seq39 113 3e-20 seq2 96.9 2e-15 seq75 89.7 3e-13 >seq58 Length=446738 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || || ||||| |||||||||||| || || |||| Sbjct 376251 AGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTAAGAGTGCGACCGTCC 376192 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| |||||||| | |||||| ||||| || | | ||||||||| Sbjct 376191 TCGAGCTGCTTGCCGGCGAAAATCAACCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 376132 Query 34298 GCTATCTTTTGCTTTA-GATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | ||| | | |||| ||| |||| ||||| || | ||||| || Sbjct 376131 TGAATCTTAGACTTGACGAT-GTCGATCGTGTCGTTCGACTCGACCTCAAGAGTGATCGT 376073 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 ||||| ||||| || || || ||||||||||| || Sbjct 376072 CTTGCCCGTGAGTGTCTTGACGAAGATCTGCATGGC 376037 >seq39 Length=522589 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| || || | || || || ||||| ||||||||||| | Sbjct 30028 CCACCGCGGAGACGGAGCACGAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCACTC 29969 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||| || || || || || ||||| ||||| ||| Sbjct 29968 AGAGTACGACCGTCCTCCAGCTGCTTACCGGCAAAGATAAGACGCTGTTGGTCCGGGGGG 29909 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | |||| || | ||||||||| Sbjct 29908 ATACCCTCCTTGTCCTGGATCTTGCTCTTGACGTTTTCGATCGTGTCAGACGATTCGACT 29849 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| ||||| || || ||||||| |||||| Sbjct 29848 TCCAGAGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAGACCTGCAT 29802 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || || ||||| |||||||||||| ||| ||| |||| Sbjct 29785 AGAACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 29726 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || || ||||| ||||| || | || ||||||||| Sbjct 29725 TCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCC 29666 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || ||||| || | |||||| || Sbjct 29665 TGGATCTTGCTCTTGACGTTGTCGATTGTGTCCGAGGACTCGACTTCGAGCGTGATAGTC 29606 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || ||||| || |||||||| ||||| Sbjct 29605 TTTCCAGTAAGAGTCTTTACAAAGATTTGCAT 29574 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || || ||||| ||||||||||| | Sbjct 30484 CCACCGCGGAGACGAAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCACTC 30425 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| |||| ||||||||| || || || || ||||| ||||| ||| Sbjct 30424 AGAGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGTTGGTCCGGGGGG 30365 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | |||| || | || || || Sbjct 30364 ATACCCTCCTTGTCCTGGATCTTGCTCTTGACGTTTTCGATCGTGTCCGAGGACTCAACT 30305 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| || || || || ||||||| |||||| Sbjct 30304 TCGAGCGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGACCTGCAT 30258 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | ||| || || ||||| |||||||||||| Sbjct 30256 CCACCACGCAGACGAAGGACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 30197 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| || || || || ||||| ||||| || Sbjct 30196 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAGGA 30137 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTC 34338 | || ||||||||| || | ||||| | || | | |||| | ||| || || Sbjct 30136 ATGCCCTCCTTGTC--CTGGATCTTGCTCTTGA--CGTTTTCGATTGTGTCCGAGGACTC 30081 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || | |||||| || ||||| || || || || || || | |||||| Sbjct 30080 GACTTCGAGCGTGATAGTCTTGCCAGTAAGGGTCTTGACGAACACCTGCAT 30030 >seq2 Length=94478 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||| ||||| | ||| || || ||||| |||||||||||| Sbjct 13078 CCACCACGCAGACGCAGCACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTA 13137 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || || ||||| ||||| ||| Sbjct 13138 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGG 13197 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||| | | | || | |||| || || || Sbjct 13198 ATACCCTCCTTGTCCTGGATCTTTCCCTTGACGTTCTCGATAGTGTCGGAAGACTCCACC 13257 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | ||||| || || || ||||| || || || |||| ||||| ||| Sbjct 13258 TCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGACTTGCATGGCT 13308 >seq75 Length=115788 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | || || || ||||| || || ||||| || ||| | || Sbjct 54563 AGCACTAGATGGAGCGTGCTCTCCTTCTGGATATTATAGTCACTGAGGGTGCGGCCATCC 54622 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||||| || || || ||||| || || ||| | || ||||||||| Sbjct 54623 TCTAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 54682 Query 34298 GCTATCTTTTGCTTTA-GATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | ||| | | || | ||||| || ||||| || | ||||| || Sbjct 54683 TGGATCTTGCTCTTGACGAT-GTCAATGGTATCGGAGGACTCGACCTCGAGAGTGATTGT 54741 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| || ||||||| |||||| Sbjct 54742 CTTGCCGGTAAGAGTCTTGACAAAGACCTGCAT 54774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071700754560