Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq40 120 4e-22 >seq40 Length=46956 Score = 120 bits (132), Expect = 4e-22 Identities = 301/456 (66%), Gaps = 5/456 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||||| || || |||||| |||||||| | || | ||||| || Sbjct 42179 AACAGCAGGCATGCAAAGTCAGTGTGCAGTCCCTCGTCCCGCGAGATCAGCTCGTTCGAG 42120 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 |||| || || ||||| ||||||||||| || |||||||| || || || || |||||| Sbjct 42119 AACGACAGACCAGGCATCAGGCCACGCTTCTTCAGCCAAAAGATCGACGCAAACGATCCG 42060 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA----CCGGC 33748 ||||||||||| || || || || || || || | || | ||| | | || || Sbjct 42059 GAAAAGAAGATGCCCTCCACGGCCGCGAACGCCACCAGGCGCTC-CGAGAAGCTCGCGCG 42001 Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || ||| | |||||| | ||||| || |||||||| || || || ||||| || Sbjct 42000 GCGGTCGTTGATCCACCGCAGCGCCCACTCCGCCTTCTTCTTCACCACCGGGATCGTCTC 41941 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || || | ||| || || | | | || | ||| || ||||||| || Sbjct 41940 GATCGCGTCAAACAGGTACTCGCGCTGCTCGGGCTCGCGGATATACGTGTCGATCAGCAG 41881 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 ||| | ||||| || || || || || ||||| || |||||||| || | || Sbjct 41880 CGAGTACGTCTCCGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGC 41821 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 ||||| |||||| || || | || || || | || || ||||| || || || Sbjct 41820 CTCGGCGGCCTGCACCTCGGTCGAGAAGCGCTCCAGCAGGTTCTCGTTCACAATGCCGTC 41761 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 || ||||| ||||||| ||||| | ||||| Sbjct 41760 CGACGCGGCAAAGAACGCCAGCACATGGCTGATAAA 41725 Score = 114 bits (126), Expect = 2e-20 Identities = 429/665 (65%), Gaps = 6/665 (1%) Strand=Plus/Plus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | |||||| ||| ||| | || || || ||||| || |||||||| ||| Sbjct 30670 GGGCACATGAGCGACCAGTCTTCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATC 30729 Query 63294 CAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 || || || ||| || || || | | | ||||| || || ||||| || Sbjct 30730 CAGAGCGC-ATAGAACAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAG 30788 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 ||||| |||| | | | |||| ||||| || || | ||| | || | | || || Sbjct 30789 ATCGATGAACTCAAACACGTCAGCGTGCCAGGGCTCGAGGTAGACAGCAAAGGCACCGGG 30848 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || ||||| || ||||| || | ||| | || ||||| || || || | | ||| || Sbjct 30849 GCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCAGTGTTGTTGTACACGCGGAGCATGGG 30908 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 | ||| ||||| | || || || |||| || || ||| ||||||| || Sbjct 30909 CACAATGCCGTTGCTCACGCCGTTCGTGCCGGCAATGTACGAGCCAGTGGCACGGATGC- 30967 Query 63533 ACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | | || | ||||| || || || ||| | || ||| | ||||| || | | Sbjct 30968 AGTGGATGTTGAGACCAATGCCACCCGCCGTCTTGCTGATCATGGCGCAGGTCTTGAGTG 31027 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 |||| |||||||| || || || || ||||| | || || || ||||| | Sbjct 31028 TGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGCACACGAGGAAGCACGACGACATCT 31087 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 | | | || || || || || | || || || || || ||||| || || | Sbjct 31088 GCGGGTTCGGGGTGCCTGCGTTGAAGAGAGTGGGCGACGCATGAGTAAAGGCCTTCTCCG 31147 Query 63712 AAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 | | |||| |||||||||||||| || | || || ||| | || || || || ||| Sbjct 31148 ACATGTAG-TTGTACGTCTCAATCGCGGCCTCAATGTCCGAGCCGTGGATGCCGACGGCG 31206 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 |||||||| | ||||||||| || | || ||| ||| ||| || || || || Sbjct 31207 ACACGCATGAGCATGTGCTGGGGGCGCTCGGCAACCTTGCCGTTAATGCGCAGCAGATAA 31266 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63890 || || | ||| || ||||| ||| ||||||| |||||| || ||||| || || Sbjct 31267 GAGCGCTCAAGAGTCTTGAAACCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAGATGATG 31326 Query 63891 ACCGA 63895 |||| Sbjct 31327 GCCGA 31331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817001673280