Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq40 284 2e-71 >seq40 Length=46956 Score = 284 bits (314), Expect = 2e-71 Identities = 590/868 (68%), Gaps = 29/868 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| |||| || || || ||| | | ||||| ||||| |||| || || Sbjct 41590 CTGTTCCCGATCCGGTACCACGAGATCTGGCAGTTCTACAAGAAGGCCGAGGCGTCGTTC 41649 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||| |||| ||| |||||||||| |||| ||||| | || ||| Sbjct 41650 TGGACCGCCGAGGAGATCGACCTGAGCAAGGACCTGCACGACTGGGACAACCGGCTGAAC 41709 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | |||||| | ||||| || | |||| |||||||||| || || || || Sbjct 41710 GACAATGAGCGCCACTTTATCAGCCATGTGCTGGCGTTCTTTGCCGCGTCGGACGGCATT 41769 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGT 125232 || ||||| || ||| || || ||||| ||| || || || |||| | | Sbjct 41770 GTGAACGAGAACCTGCTGGAGCGCTTCTCGACCGAGGTG--CAGGCCGCCGAGGCGCGCT 41827 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| |||||||| ||||| | |||||||| | |||||| |||| Sbjct 41828 GCTTCTACGGCTTCCAGATCATGATGGAGAATATCCACTCGGAGACGTACTCGCTGCTGA 41887 Query 125293 TTGACATGTACATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 | |||| ||| || ||||| || ||| || | || || ||| |||| ||||| | Sbjct 41888 TCGACACGTATATCCGCGAGCCCGAGCAGCGCGAGTACCTG---TTTGACGCGATCGAGA 41944 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 || | ||| | || ||||| | |||| | | ||||||||| | ||| | Sbjct 41945 CGATCCCGGTGGTGAAGAAGAAGGCGGAGTGGGCGCTGCGGTGGATCAACGACCGCCGCG 42004 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 | | | | || | |||||||| ||||| ||||| ||||||||||||||||| || Sbjct 42005 CGAGCTTCTCGGAGCGCCTGGTGGCGTTCGCGGCCGTGGAGGGCATCTTCTTTTCCGGAT 42064 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 |||||| | ||||||||||| |||||||| || || ||||| || ||| || | | Sbjct 42065 CGTTTGCGTCGATCTTTTGGCTGAAGAAGCGTGGCCTGATGCCTGGTCTGTCGTTCTCGA 42124 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || |||||||| || ||| ||||||||| || ||||| || Sbjct 42125 ACGAGCTGATCTCGCGGGACGAGGGACTGCACACTGACTTTGCATGCCTGCTGTT---CA 42181 Query 125590 ACTATCTG-CGTCCCGAGTGCAGATCCAGCGATGA-AAAGGTCATCAACATTGTAACCGA 125647 | | ||| | || | ||| ||||| | || ||| |||| | ||||| Sbjct 42182 GCCACCTGAAGAAGCGGGCGCA-CCCCAGC-ACGATCGAGGCGATCA------TCACCGA 42233 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 |||||| ||| || || || ||| | | || | || ||||| |||| ||||| Sbjct 42234 GGCCGTGGAGATTGAGCAGGACTTTTTGTCGGACGCGCTGCCGGTGTCGCTGATCGGCAT 42293 Query 125708 GAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767 |||| ||| |||||| ||||||| |||||||| ||||| || || ||| | | Sbjct 42294 GAACGCGCGGCTGATGTGCCAGTACATTGAGTTTGTCGCAGACCGGCTGCTG---GTGGC 42350 Query 125768 GATTGG---CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATC 125824 | | || || ||| ||| |||| ||||| || || || || ||| | ||| || Sbjct 42351 GCTCGGGAACCCGAAGCACTACCACGCAAAGAACCCATTCGACTTTATGGAGAACATTTC 42410 Query 125825 ACTAGAGGGTAAGACCAACTTTTTCGAG 125852 || |||| ||| | |||||||||||| Sbjct 42411 GCTGCAGGGCAAGTCGAACTTTTTCGAG 42438 Score = 226 bits (250), Expect = 4e-54 Identities = 391/564 (69%), Gaps = 8/564 (1%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCGG 96883 ||| | ||||| |||||| | ||||||| || || | || ||||| |||||||| Sbjct 30917 GGCATTGTGCCCATGCTCCGCGTGTACAACAACACTGCC-CGCTACGTCGACCAGGGCGG 30859 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 ||| || || || || || | || |||||| | || || |||||||| ||||| ||||| Sbjct 30858 CAACAAGCGCCCCGGTGCCTTTGCTGTCTACCTCGAGCCCTGGCACGCTGACGTGTTTGA 30799 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTA 97003 || ||||| ||||||| ||| ||| || |||| || ||| | ||| |||| || Sbjct 30798 GTTCATCGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGACCTGTTCTA 30739 Query 97004 TGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGCTACTGGAG 97060 ||| |||||| | || ||| ||||||||||||| ||| || ||| | ||||| Sbjct 30738 TGCGCTCTGGATCCCTGATCTGTTCATGAAGCGTGTCGAGAAGAACGAAG---ACTGGTC 30682 Query 97061 CCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGC 97120 || |||||||||| | | | |||||||| || || |||| ||| | ||||| |||| Sbjct 30681 GCTCATGTGCCCCGCCGAGGCCCCCGGTCTCTCTGACTGCTACGGCAAGGAGTTCGAGGA 30622 Query 97121 CAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACT 97180 ||| | ||||||| ||||| || | | | ||| | || | | | || Sbjct 30621 GCTCTACGAGCGGTACGAGCGCGAGGGACGCGCCAAGCGCACTGTCAAGGCGCAAAAGCT 30562 Query 97181 GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGA 97240 |||| | || ||| | ||| ||| | ||||| || | || | ||||| |||||||| Sbjct 30561 GTGGTACGCGATCCTCGAGGCCCAGATCGAGACGGGCAACCCCTTTATTCTGTACAAGGA 30502 Query 97241 TACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTG 97300 | | | ||| |||| ||||||||| || | ||||||||| |||| || ||||| Sbjct 30501 TGCTGCGAACAGCAAGAGCAACCAAAAGAACCTCGGCACCATCCGCAGCTCGAACCTGTG 30442 Query 97301 CACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGT 97360 ||| || ||| | |||||| ||| || |||||||| || || ||| || || ||| | Sbjct 30441 CACAGAGATTATCGAGTACAGCTCGCCCGACGAGACCGCCGTGTGCAACCTCGCGTCGAT 30382 Query 97361 CAATCTGCCCAAGTTTGTAGAGGG 97384 ||||||| ||||| ||||| Sbjct 30381 TGCGCTGCCCACCTTTGTCGAGGG 30358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058495993760