Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq40 118 1e-21 >seq40 Length=46956 Score = 118 bits (130), Expect = 1e-21 Identities = 431/667 (65%), Gaps = 6/667 (1%) Strand=Plus/Plus Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097 || ||||| | |||||| ||| ||| | || || || ||||| || |||||||| ||| Sbjct 30670 GGGCACATGAGCGACCAGTCTTCGTTCTTCTCGACACGCTTCATGAACAGATCAGGGATC 30729 Query 63098 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63156 || || || ||| || || || | || | ||||| || || ||||| || Sbjct 30730 CAGAGCGC-ATAGAACAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAG 30788 Query 63157 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63216 ||||| |||| | | | |||| ||||| || || | ||| | || | | || || Sbjct 30789 ATCGATGAACTCAAACACGTCAGCGTGCCAGGGCTCGAGGTAGACAGCAAAGGCACCGGG 30848 Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 || ||||| || ||||| || | ||| | || ||||| || || || | | ||| || Sbjct 30849 GCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCAGTGTTGTTGTACACGCGGAGCATGGG 30908 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 | ||| || ||| || || || || | || || ||| ||||||| || Sbjct 30909 CACAATGCCGTTGCTCACGCCGTTCGTGCCGGCAATGTACGAGCCAGTGGCACGGATGC- 30967 Query 63337 ACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63395 | | || | ||||| || || || ||| | || ||| | ||||| || | | Sbjct 30968 AGTGGATGTTGAGACCAATGCCACCCGCCGTCTTGCTGATCATGGCGCAGGTCTTGAGTG 31027 Query 63396 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 63455 | || ||||||||||| || || ||| ||||| | || || || ||||| | Sbjct 31028 TGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGCACACGAGGAAGCACGACGACATCT 31087 Query 63456 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAG 63515 | | || || || || || | || || || || |||||||| || || | Sbjct 31088 GCGGGTTCGGGGTGCCTGCGTTGAAGAGAGTGGGCGACGCATGAGTAAAGGCCTTCTCCG 31147 Query 63516 AAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574 | | |||| |||||||||||||| || | || || ||| | || || || || ||| Sbjct 31148 ACATGTAG-TTGTACGTCTCAATCGCGGCCTCAATGTCCGAGCCGTGGATGCCGACGGCG 31206 Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634 |||||||| | ||||||||| || | || | | |||| ||| || || || || Sbjct 31207 ACACGCATGAGCATGTGCTGGGGGCGCTCGGCAACCTTGCCGTTAATGCGCAGCAGATAA 31266 Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63694 || || | ||| || ||||| ||| ||||||| |||||| || ||||| || || Sbjct 31267 GAGCGCTCAAGAGTCTTGAAACCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAGATGATG 31326 Query 63695 ACCGAGT 63701 |||||| Sbjct 31327 GCCGAGT 31333 Score = 114 bits (126), Expect = 2e-20 Identities = 300/456 (66%), Gaps = 5/456 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || ||||| || || ||| || |||||||| | || | ||||| || Sbjct 42179 AACAGCAGGCATGCAAAGTCAGTGTGCAGTCCCTCGTCCCGCGAGATCAGCTCGTTCGAG 42120 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 |||| || || ||||| ||||||||||| || |||||||| || |||||||| ||||| Sbjct 42119 AACGACAGACCAGGCATCAGGCCACGCTTCTTCAGCCAAAAGATCGACGCAAACGATCCG 42060 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA----CCGGC 32827 |||||||| || || || || ||||| || || | || | ||| | | || || Sbjct 42059 GAAAAGAAGATGCCCTCCACGGCCGCGAACGCCACCAGGCGCTC-CGAGAAGCTCGCGCG 42001 Query 32828 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 || ||| | |||||| | ||||| || |||||||| || || || || ||||| Sbjct 42000 GCGGTCGTTGATCCACCGCAGCGCCCACTCCGCCTTCTTCTTCACCACCGGGATCGTCTC 41941 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947 || || | ||| || || | | | || | ||| || || |||| || Sbjct 41940 GATCGCGTCAAACAGGTACTCGCGCTGCTCGGGCTCGCGGATATACGTGTCGATCAGCAG 41881 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 ||| | ||||| || || || || || || || || ||||||||||| | || Sbjct 41880 CGAGTACGTCTCCGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGC 41821 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 ||||| ||| || || || | || || || | || || ||||| || ||||| Sbjct 41820 CTCGGCGGCCTGCACCTCGGTCGAGAAGCGCTCCAGCAGGTTCTCGTTCACAATGCCGTC 41761 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 || ||||| ||||||| ||||| | ||||| Sbjct 41760 CGACGCGGCAAAGAACGCCAGCACATGGCTGATAAA 41725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631398049600