Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq75 111 1e-19 seq39 105 6e-18 seq2 102 7e-17 seq58 87.8 2e-12 >seq75 Length=115788 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || ||| | ||||| || || ||||||| || || || || || Sbjct 54774 ATGCAGGTCTTTGTCAAGACTCTTACCGGCAAGACAATCACTCTCGAGGTCGAGTCCTCC 54715 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| |||| || || || ||||||||||| ||||| || |||||| Sbjct 54714 GATACCATTGACATCGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAA 54655 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| || |||||||| ||||||| || || || || Sbjct 54654 CAGCGTCTGATCTTTGCAGGCAAGCAACTAGAGGATGGCCGCACCCTCAGTGACTATAAT 54595 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || ||| | ||| |||| Sbjct 54594 ATCCAGAAGGAGAGCACGCTCCATCTAGT 54566 >seq39 Length=522589 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || |||| || ||||| || || | Sbjct 29574 ATGCAAATCTTTGTAAAGACTCTTACTGGAAAGACTATCACGCTCGAAGTCGAGTCCTCG 29633 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| || || ||| Sbjct 29634 GACACAATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 29693 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | ||||| |||||| || ||| |||||| Sbjct 29694 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCAGCGACTACAAC 29753 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 29754 ATCCAGAAGGA 29764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || || | || || || ||| ||||||| ||||| ||| | | Sbjct 29802 ATGCAGGTCTTTGTCAAGACCCTCACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCT 29861 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || |||||||||||||| || || || ||| Sbjct 29862 GACACGATCGAAAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 29921 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 || |||||||| |||||||| || ||| | ||||| Sbjct 29922 CAGCGTCTTATCTTTGCCGGTAAGCAGCTGGAGGA 29956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | || || || || | || || || || |||| || ||||| || || | Sbjct 30030 ATGCAGGTGTTCGTCAAGACCCTTACTGGCAAGACTATCACGCTCGAAGTCGAGTCCTCG 30089 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||||||||| ||||| || || ||| Sbjct 30090 GACACAATCGAAAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 30149 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | ||||| |||||| || ||| |||||| Sbjct 30150 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCAGCGACTACAAC 30209 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 30210 ATCCAGAAGGA 30220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || || | || || || || |||| || ||||| || || | Sbjct 30258 ATGCAGGTCTTTGTCAAGACCCTTACTGGCAAGACTATCACGCTCGAAGTTGAGTCCTCG 30317 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || |||||||||||||| || || || ||| Sbjct 30318 GACACGATCGAAAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 30377 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||||||||| ||| | ||||| ||| || | || |||||| Sbjct 30378 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGTACTCTGAGTGACTACAAC 30437 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 30438 ATCCAGAAGGA 30448 >seq2 Length=94478 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||| | || || || || | || || || || |||| ||||| ||||| | || Sbjct 13304 ATGCAAGTCTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 13245 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| || || |||||||||||||| || || || ||| Sbjct 13244 GACACTATCGAGAACGTCAAGGGAAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 13185 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | |||||| ||||||| | ||| |||||| Sbjct 13184 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTAGCGACTACAAC 13125 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 13124 ATCCAGAAGGA 13114 >seq58 Length=446738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||||||||| || || | | | Sbjct 376040 ATGCAGATCTTCGTCAAGACACTCACGGGCAAGACGATCACTCTTGAGGTCGAGTCGAAC 376099 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| |||| || ||||| ||||||||||||||||| || || ||| Sbjct 376100 GACACGATCGACATCGTCAAGTCTAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 376159 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 376160 CAGCGGTTGATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTTAGCGACTACAAC 376219 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 376220 ATCCAGAAGGA 376230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727611226940