Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq39 102 6e-17 seq2 91.5 1e-13 seq75 86.0 5e-12 >seq39 Length=522589 Score = 102 bits (112), Expect = 6e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || || ||||| |||||||||||||| |||||||| || || | || || Sbjct 29791 AGGCGGAGAACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTGAGCGTGCG 29733 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||||||||| ||||||||||| || ||| || | || ||| Sbjct 29732 GCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTC 29673 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||| | | | | || | || ||| ||||| ||| Sbjct 29672 CTTGTCCTGGATCTTGCTCTTGACGTTGTCGATTGTGTCCGAGGACTCGACTTCGAGCGT 29613 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| || || || || ||||||||||||||| Sbjct 29612 GATAGTCTTTCCAGTAAGAGTCTTTACAAAGATTTGCATT 29573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || ||||| |||||||||||||| |||||||| || || Sbjct 30257 ACCACCACGCAGACGAAGGACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GC 30199 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || |||| || | |||||||||||||| ||||||||||| || ||| | Sbjct 30198 TGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAG 30139 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 30138 GAATGCCCTCCTTGTCC 30122 >seq2 Length=94478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || || |||||||||||||| |||||||| || || Sbjct 13077 ACCACCACGCAGACGCAGCACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GC 13135 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || | || || | |||||||||||||| ||||||||||| || ||| | Sbjct 13136 TAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGG 13195 Query 34019 GCACGCTCTCTTTGTCC 34035 | | | ||| |||||| Sbjct 13196 GGATACCCTCCTTGTCC 13212 >seq75 Length=115788 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||| ||||| ||||||||||||||||| || || || || | | || || Sbjct 54557 AGACGGAGCACTAGATGGAGCGTGCTCTCCTTCTGGATATTATAGTC-ACTGAGGGTGCG 54615 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | ||||||||| ||||| ||||| ||||| |||||| || | || ||| Sbjct 54616 GCCATCCTCTAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGATCCGGGGGAATGCCCTC 54675 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087 |||||| || || ||| | || || | |||| | || ||| |||| | Sbjct 54676 CTTGTCCTGGATCTTGCTCTTGA-CGATGTCAATGGTATCGGAGGACTCGACCTCGAGAG 54734 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||||| || ||||| || || || ||||||| ||||| Sbjct 54735 TGATTGTCTTGCCGGTAAGAGTCTTGACAAAGACCTGCAT 54774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062032220952