Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq40 188 9e-43 >seq40 Length=46956 Score = 188 bits (208), Expect = 9e-43 Identities = 908/1420 (64%), Gaps = 28/1420 (2%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || ||||| || | || || |||||| | |||||||||||||||||||| Sbjct 29821 AACTCGCCGGCGAGCACACGGCGCATGTAAATGTTGCTGGTGTATGGCTCAAAGCACTCG 29880 Query 115936 TTGTTACCCAAGATTTGGGCT-GTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || | || ||| | |||| || || || |||||||| || || | || || ||| Sbjct 29881 TTAA-AGCCGAGAATCTGGCTCGTCGACGCGGTGGGCATCGGGGCGAGCAGCAGCGAGTT 29939 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 116054 || || || | | ||| ||||||| | | ||||||| || | | | | Sbjct 29940 ACGCAGGCCGTGCTGCGCAATCTTGGCCTTGAGCGAGGCCCAGTCCCAGAGGTCCGTGGG 29999 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 | | |||||| || |||| || || || ||| ||| || ||||| |||| Sbjct 30000 AGTACGGTTCCACATGTCGTACTGCAGAATGCCCTGGCTCGCAGGGCTGCCCTCGTATGT 30059 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC-CTCGAGGGCTGCGTGATACA 116173 ||| || | ||| | ||| || | ||| | | || |||||| || ||||| || | Sbjct 30060 CTCGTAGGTGCCGTACTGCTCGGCAAGCTCGCA-CGAGCGCTCGAGCGCAGCGTGGTAAA 30118 Query 116174 TTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCG-AGACG 116231 | |||||||| || | | |||| || | | ||||| | ||||| | | || | Sbjct 30119 TCGTCTCAAAGATCTGCACGTTCAGCTGGCGCG-CCTCGGGGCTGTCAAAGGGGTAGCC- 30176 Query 116232 GCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 116290 || | || || |||| |||||||| |||||||||| || || ||||| || | || Sbjct 30177 -CATGATCATGAACGCATCAGCGAGACCCTGGACACCGATACCGATCGGGCGGTGGCGCA 30235 Query 116291 TATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 116350 | || || || || | ||| ||||| || | || ||||||| | | || || | Sbjct 30236 TGTTGGAGCGGCGCGCCGACTCGACGGGGTAGTAGTTGATATCGATGATGCGGTTCAGGT 30295 Query 116351 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-TCT 116409 | ||||| ||||| | || || || || | | | | | | ||| | Sbjct 30296 TGCGCGTGACGACCTTGGCGACGTCGTGGAGACGCTGGAAGTTGTACGTCTTGGTCGTAG 30355 Query 116410 T--CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 | | | |||| | | || || || || ||||| || || ||||| | |||||| || Sbjct 30356 TGCCCTCGACAAAGGTGGGCAGCGCAATCGACGCGAGGTTGCACACGGCGGTCTCGTCGG 30415 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 ||||||| ||||| || || |||| || || || |||||||| | ||||| Sbjct 30416 GCGAGCTGTACTCGATAATCTCTGTGCACAGGTTCGAGCTGCGGATGGTGCCGAGGTTCT 30475 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 |||| || ||| |||| ||||||||||| || ||| | || | |||||||| Sbjct 30476 TTTGGTTGCTCTTGCTGTTCGCAGCATCCTTGTACAGAATAAAGGGGTTGCCCGTCTCGA 30535 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC 116646 | |||| || ||| || || | ||| | | | ||| || | |||||| ||||| || Sbjct 30536 TCTGGGCCTCGAGGATCGCGTACCACAGCTTTTGCGCCTTG-ACAGTGCGCTTGGCGCGT 30594 Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAG 116705 ||||| ||||||| |||||| |||| ||||| | || ||| || ||||| Sbjct 30595 CCCTCGCGCTCGTACCGCTCGTAGAGCTCCTCGAACTCCT-TGCCGTAGCAGTCAGAGAG 30653 Query 116706 CCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 116765 || || |||| | || || | ||| ||||| | | || ||| || |||||||| Sbjct 30654 ACCGGGGGCCTCGGCGGGGCACATGAGCGACCAGTCTTCGTTCTTCTCGACACGCTTCAT 30713 Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 116825 ||| || || |||||||||||||| |||| || || || || | || || | || Sbjct 30714 GAACAGATCAGGGATCCAGAGCGCATAGAACAGGTCACGGGCACGGACCTCCTCCTTGCC 30773 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 116885 || || |||| || | || || | | || |||||||| || || ||||| || Sbjct 30774 GTGGTTCTTGCGCAGATCGATGAACTCAAACACGTCAGCGTGCCAGGGCTCGAGGTAGAC 30833 Query 116886 CGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAA 116942 || | | || ||| || |||||| || || | || || ||| | Sbjct 30834 AGCAAAGGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCAGTGTTGTTGTA 30893 Query 116943 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGAC 117000 ||||| ||||| || | || || | ||| || || || || |||||| | Sbjct 30894 CACGCGGAGCATGGGCACAATGCCGTTGCTCACGCCGTTCGTGCCGGCAATGTACGAGCC 30953 Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060 |||| | || |||||||| | |||||| || || ||| ||| ||| Sbjct 30954 --AGTGGCACGGATGCAGTGGATGTTGAGACCAATGCCACCCGCCGTCTTGCTGATCATG 31011 Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120 ||||| | |||| || ||||||| || ||||||||||| |||| | | |||| Sbjct 31012 GCGCAGGTCTTGAGTGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGCACACGAGG 31071 Query 117121 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 117180 ||||| |||||| || || | || || || ||||||||||| || || | ||| || Sbjct 31072 AAGCACGACGACATCTGCGGGTTCGGGGTGCCTGCGTTGAAGAGAGTGGGCGACGCATGA 31131 Query 117181 ATGAA--CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 | || | | | | ||||| | | ||| ||||| | | | |||||| | Sbjct 31132 GTAAAGGCCTTC--TCCGACATGTAGTTGTACGTCTCAATCGCGGCCTCAATGTCCGAGC 31189 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||| || |||| | ||| ||||| | ||||| ||||| Sbjct 31190 CGTGGATGCCGACGGCGACACGCATGAGCATGTGCTGGGG 31229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506617168160