Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq40 358 7e-94 seq2 132 5e-26 seq58 123 2e-23 seq39 123 2e-23 >seq40 Length=46956 Score = 358 bits (396), Expect = 7e-94 Identities = 633/910 (70%), Gaps = 17/910 (2%) Strand=Plus/Minus Query 132609 ATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCAT 132668 ||| ||||||||| ||| ||||| || | || |||| || |||||| | ||| Sbjct 42456 ATAGTCGCCCACCCGACGCTCGAAAAAGTTCGACTTGCCCTGCAGCGAAATGTTCTCCAT 42397 Query 132669 AAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT--GGTGCCGATCAGGTCGACGAGCAGC 132726 ||| || || ||||| || || ||||||||| ||| || || | || |||||| Sbjct 42396 AAAGTCGAATGGGTTCTTTGCGTGGTAGTGCTTCGGGTTCCCG--AGCGCCACCAGCAGC 42339 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACG 132785 | ||| || || ||||| ||||| || |||| | ||| | | | || | ||| Sbjct 42338 CGGTCTGCGACAAACTCAATGTACTGGCACATCAGCCGCGCGTTCATG-CCGATCAGCGA 42280 Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845 |||||||||||| || | | |||| ||||| || | || || ||||||| ||| | Sbjct 42279 CACCGGCAGCGCGTCCGACAAAAAGTCCTGCTCAATCTCCACGGCCTCGGTGATGATCGC 42220 Query 132846 CCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGT 132904 | | || || | | | || ||| | | || || |||||| || ||| ||||||| Sbjct 42219 CTCGAT-CGTGCTGGGGTGCGCCCGCTTCTTCAGGTGGCTGAACAGCAGGCATGCAAAGT 42161 Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964 | |||| |||||||||| || || || ||||| ||| | || || ||||| | Sbjct 42160 CAGTGTGCAGTCCCTCGTCCCGCGAGATCAGCTCGTTCGAGAACGACAGACCAGGCATCA 42101 Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024 |||| || || || |||||||| || | || || || |||||||||| |||||| | Sbjct 42100 GGCCACGCTTCTTCAGCCAAAAGATCGACGCAAACGATCCGGAAAAGAAGATGCCCTCCA 42041 Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084 |||||||||| |||||||||||||| ||| | || | | |||||| |||| Sbjct 42040 CGGCCGCGAACGCCACCAGGCGCTCCGAGAAGCTCGCGCGGCGGTCGTTGATCCACCGCA 41981 Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGA 133144 ||||||| || ||||| | || || ||| ||||| ||||| |||| |||| | | Sbjct 41980 GCGCCCACTCCGCCTTCTTCTTCACCACCGGGATCGTCTCGATCGCGTCAAACAG--GTA 41923 Query 133145 GTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 | | || | || ||| | || |||||||| || ||| ||| | |||||||| Sbjct 41922 CTCGCGCTGCTCGGGCTCGCGGATATACGTGTCGATCAGCAGCGAGTACGTCTCCGAGTG 41863 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 | |||||||| ||| || |||||||| ||||| ||||||||| | ||||||| || Sbjct 41862 GATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGCGGCCTGCACCTC 41803 Query 133263 TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 | ||| ||||| | ||| || ||||| || |||||||| ||||| || || || Sbjct 41802 GGTCGAGAAGCGCTCCAGCAGGTTCTCGTTCACAATGCCGTCCGACGCGGCAAAGAACGC 41743 Query 133323 CAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGT 133379 |||||| || |||| || |||||||| |||||||||| || | |||||||| || Sbjct 41742 CAGCACATGGCTGATAAAGTGGCGCTCATTGTCGTTCAGCCGGTTGTCCCAGTCGTGCAG 41683 Query 133380 GTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| |||||| | ||||||| ||||||| |||||||||||||| || ||||| | Sbjct 41682 GTCCTTGCTCAGGTCGATCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTAGA- 41624 Query 133440 ACT-CCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCA 133498 ||| ||| || || || | || || || | |||||| || ||| ||| || Sbjct 41623 ACTGCCAGATCTCGTGGTACCGGATCGGGAACAGCACAAAGCGCCGGTTCGACTCGACCA 41564 Query 133499 ACAGCGGCTC 133508 ||||||||| Sbjct 41563 GCAGCGGCTC 41554 >seq2 Length=94478 Score = 132 bits (146), Expect = 5e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||| | ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 13304 ATGCAAGTCTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 13245 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 13244 GACACTATCGAGAACG-TCAAGGGAAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 13186 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || ||||| ||||| || || | |||||||| | ||||||||| Sbjct 13185 ACAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTAGCGACTACAA 13126 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||| || || || | ||||||||| || | || || Sbjct 13125 CATCCAGAAGGAGAGC-ACTCTCCACCTTGTGCTGCGTCTGCGTGGTGG 13078 >seq58 Length=446738 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || ||||| | || |||||| | | | Sbjct 376040 ATGCAGATCTTCGTCAAGACACTCACGGGCAAGACGATCACTCTTGAGGTCGAGTCGAAC 376099 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | | ||| || || | ||||| ||||| ||||| | ||||| Sbjct 376100 GACA-CGATCGACATCGTCAAGTCTAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 376158 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||||| | |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 376159 ACAGCGGTTGATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTTAGCGACTACAA 376218 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 376219 CATCCAGAAGGA 376230 >seq39 Length=522589 Score = 123 bits (136), Expect = 2e-23 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || ||||| || || || || || || ||||| |||| |||||| || | Sbjct 29573 AATGCAAATCTTTGTAAAGACTCTTACTGGAAAGACTATCACGCTCGAAGTCGAGTCCTC 29632 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | |||| | |||| || |||| ||||| ||||| ||||| | ||| Sbjct 29633 GGACACAATCGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGAC 29690 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || || | || ||||| ||||| || |||| ||||| |||| ||||||| Sbjct 29691 CAACAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCAGCGACTAC 29750 Query 38421 AACATCCAAAAGGA 38434 |||||||| ||||| Sbjct 29751 AACATCCAGAAGGA 29764 Score = 123 bits (136), Expect = 2e-23 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| | ||||| || || || || ||||| || ||||| |||| |||||| || | Sbjct 30030 ATGCAGGTGTTCGTCAAGACCCTTACTGGCAAGACTATCACGCTCGAAGTCGAGTCCTCG 30089 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| || |||| ||||| ||||| ||||| | |||| Sbjct 30090 GACACAATCGAAAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 30147 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | || ||||| ||||| || |||| ||||| |||| |||||||| Sbjct 30148 AACAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCAGCGACTACA 30207 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||| || || || | || || ||| || | || || Sbjct 30208 ACATCCAGAAGGAGAGC-ACTCTTCACCTTGTCCTTCGTCTGCGTGGTGG 30256 Score = 109 bits (120), Expect = 5e-19 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| | || || || || ||||| ||||| || ||||| | || ||||| | | Sbjct 29802 ATGCAGGTCTTTGTCAAGACCCTCACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCT 29861 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | || | | |||| || |||| ||||| ||||| || ||| | ||||| Sbjct 29862 GACA-CGATCGAAAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 29920 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || || || |||||||| |||| || || || | |||||||| Sbjct 29921 ACAGCGTCTTATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGTACTCTGAGTGACTACAA 29980 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||| ||||| ||| | ||||| ||| Sbjct 29981 CATCCAGAAGGAGAGC-ACGCTCCATCTCGTGCTCCGT 30017 Score = 109 bits (120), Expect = 5e-19 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| | || || || || || || ||||| || ||||| |||| || ||| || | Sbjct 30258 ATGCAGGTCTTTGTCAAGACCCTTACTGGCAAGACTATCACGCTCGAAGTTGAGTCCTCG 30317 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | || | | |||| || |||| ||||| ||||| || ||| | ||||| Sbjct 30318 GACA-CGATCGAAAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 30376 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || ||||| |||||||| |||| || || || | |||||||| Sbjct 30377 ACAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGTACTCTGAGTGACTACAA 30436 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||| ||||| || | || || ||| Sbjct 30437 CATCCAGAAGGAGAGC-ACGCTCCACCTTGTCCTTCGT 30473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172324835840