Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq39 96.9 2e-15 seq2 86.0 4e-12 seq58 84.2 1e-11 >seq39 Length=522589 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || | || | || |||||||| || ||| Sbjct 30454 GTGCTCTCCTTCTGGATGTTGTAGTCACTCAGAGTACGGCCGTCCTCCAGCTGCTTGCCG 30395 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || || || ||||| | || | ||||||||||| ||||| ||| Sbjct 30394 GCAAAGATAAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTG 30335 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | | |||| || || |||||| |||| || || || || || || || ||| Sbjct 30334 ACGTTTTCGATCGTGTCCGAGGACTCAACTTCGAGCGTGATAGTCTTGCCAGTAAGGGTC 30275 Query 34965 TTCACAAAGATCTGCATA 34982 || ||||||| ||||||| Sbjct 30274 TTGACAAAGACCTGCATA 30257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||||| || ||||| ||||| ||||| || | || | || || Sbjct 29783 AACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 29724 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || || || || ||||| | || | ||||||||||| Sbjct 29723 AAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTG 29664 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | || || ||| || |||| || || || || Sbjct 29663 GATCTTGCTCTTGACGTTGTCGATTGTGTCCGAGGACTCGACTTCGAGCGTGATAGTCTT 29604 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || |||||||| |||||||| ||||| Sbjct 29603 TCCAGTAAGAGTCTTTACAAAGATTTGCAT 29574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || | || | || |||||||| || ||| Sbjct 29998 GTGCTCTCCTTCTGGATGTTGTAGTCACTCAGAGTACGACCGTCCTCCAGCTGCTTACCG 29939 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || || || ||||| | || | ||||||||||| ||||| ||| Sbjct 29938 GCAAAGATAAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTG 29879 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | | |||| ||| | || || || | || || || || || ||||| ||| Sbjct 29878 ACGTTTTCGATCGTGTCAGACGATTCGACTTCCAGAGTGATCGTCTTGCCAGTGAGGGTC 29819 Query 34965 TTCACAAAGATCTGCATA 34982 || ||||||| ||||||| Sbjct 29818 TTGACAAAGACCTGCATA 29801 >seq2 Length=94478 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| |||| | || |||| || ||||| || ||| Sbjct 13108 GTGCTCTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 13167 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || || || ||||| | || | ||||||||||| ||||| ||| Sbjct 13168 GCAAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTTCCCTTG 13227 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | || | || | ||| || || | ||| || || || |||||||| ||| Sbjct 13228 ACGTTCTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTC 13287 Query 34965 TTCACAAAGATCTGCAT 34981 || || |||| ||||| Sbjct 13288 TTGACGAAGACTTGCAT 13304 >seq58 Length=446738 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| ||| | || | || || ||||| || ||| Sbjct 376236 GTGCTCTCCTTCTGGATGTTGTAGTCGCTAAGAGTGCGACCGTCCTCGAGCTGCTTGCCG 376177 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || | || || ||||| | || | ||||||||||| |||||| ||| Sbjct 376176 GCGAAAATCAACCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTAGACTTG 376117 Query 34905 ACGGATG-CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGT 34963 ||| ||| | |||| || | ||| || || | || || || || |||||||| || Sbjct 376116 ACG-ATGTCGATCGTGTCGTTCGACTCGACCTCAAGAGTGATCGTCTTGCCCGTGAGTGT 376058 Query 34964 CTTCACAAAGATCTGCAT 34981 ||| || ||||||||||| Sbjct 376057 CTTGACGAAGATCTGCAT 376040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633299308128