Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq40 159 4e-34 >seq40 Length=46956 Score = 159 bits (176), Expect = 4e-34 Identities = 540/823 (66%), Gaps = 31/823 (4%) Strand=Plus/Plus Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 ||||||| | ||| ||||| || | ||| || || || || || | |||||||||| Sbjct 30422 TGTACTCGATAATCTCTGTGCACAGGTTCGAGCTGCGGATGGTGCCGAGGTTCTTTTGGT 30481 Query 111339 TACTCTTCTTGTT-GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 | ||||| |||| ||| ||||||||||| || || |||| | |||||||| |||| Sbjct 30482 TGCTCTTGCTGTTCGCA-GCATCCTTGTACAGAATAAAGGGGTTGCCCGTCTCGATCTGG 30540 Query 111398 GATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 111456 | | ||| || || | ||| | | | ||| || | ||| || ||||| |||||||| Sbjct 30541 GCCTCGAGGATCGCGTACCACAGCTTTTGCGCCTTG-ACAGTGCGCTTGGCGCGTCCCTC 30599 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 111516 ||||||| |||||| | || ||||||| || ||| |||||||| || Sbjct 30600 GCGCTCGTACCGCTCGTAGAGCTCCTCGAACTCCTTGCCGTAGCAGTCAGAGAGACCGGG 30659 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAA 111574 |||| | | || || | || ||||| | | | ||| ||| || ||||||||||| Sbjct 30660 GGCCTCGGCGGGGCACATGAGCGACCA--GTCTTCGTTCTTCTCGACACGCTTCATGAAC 30717 Query 111575 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTG 111633 || || || ||||| || | | || || || | ||| || |||| || | || || Sbjct 30718 AGATCAGGGATCCAGAGCGCATAGAACAGGTCACGGGCACGGA-CCTCCTCCTTGCCGTG 30776 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| || | || | |||||| | | || |||||||| ||||| || ||||| || Sbjct 30777 GTTCTTGCGCAGATCGATGAACTCAAACACGTCAGCGTGCCAGGGCTCGAGGTAGACAGC 30836 Query 111694 GATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAA 111746 | | || ||| | | ||||| || | || ||||| || ||| ||| Sbjct 30837 AAAGGCACCGGGGCGCTTGTTGCCGCCC----TGGTCGACGTAGCGGGCAGTGTTGTTGT 30892 Query 111747 ATACGCGAAGCATTGGAATAATACCATCTGAT-TGACCATTTGTCCCCCGAA--TACGAG 111803 | ||||| ||||| || | ||| || | || | || || || || || |||||| Sbjct 30893 ACACGCGGAGCATGGGCACAATGCCGT-TGCTCACGCCGTTCGTGCCGGCAATGTACGAG 30951 Query 111804 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 111863 | |||| | | ||||||| | ||||| || || ||| ||| ||| Sbjct 30952 --CCAGTGGCACGGATGCAGTGGATGTTGAGACCAATGCCACCCGCCGTCTTGCTGATCA 31009 Query 111864 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAA 111923 || || | | || || | ||||| || | ||| ||||| ||||| || | | Sbjct 31010 TGGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGCACACGA 31069 Query 111924 GGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGT 111983 ||||||| ||||||||||| | || || || || |||||||| || || | || | Sbjct 31070 GGAAGCACGACGACATCTGCGGGTTCGGGGTGCCTGCGTTGAAGAGAGTGGGCGACGCAT 31129 Query 111984 GAATGAA--CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTC 112041 || | || | | | | ||||| | || ||| ||||| | | | |||||||| Sbjct 31130 GAGTAAAGGCCTTC--TCCGACATGTAGTTGTACGTCTCAATCGCGGCCTCAATGTCCGA 31187 Query 112042 CCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 ||||||||||||| ||||| ||||||| ||||| ||| ||| Sbjct 31188 GCCGTGGATGCCGACGGCGACACGCATGAGCATGTGCTGGGGG 31230 Score = 118 bits (130), Expect = 1e-21 Identities = 336/503 (67%), Gaps = 10/503 (2%) Strand=Plus/Minus Query 122369 CATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCA 122428 ||||||| || ||||| ||| || ||||| | ||| || | || |||||| |||| Sbjct 42457 CATAGTCGCCCACCCGACGCTCGAAAAAGTTCGACTTGCCCTGCAGCGAAATGTTCTCCA 42398 Query 122429 TAAAGTCAAATGGATTCTTCGCGTTCCAAATGGGT-GGCACCCCAACTTGTTTGAGGAGA 122487 ||||||| ||||| ||||| |||| | || | || ||| | || || Sbjct 42397 TAAAGTCGAATGGGTTCTTTGCGTGGTAG-TGCTTCGGGTTCCCGAGCGCCACCAGCAGC 42339 Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTA 122547 || || | ||| |||||||||||| | ||||| | | |||||| ||||| || | Sbjct 42338 CGGTCTGCGACAAACTCAATGTACTGGCACATCAGCCGCGCGTTCATGCCGATCAGCG-A 42280 Query 122548 CATGGG-AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 || || || |||||| | | || | | ||||||||| || ||||| | | ||| || Sbjct 42279 CACCGGCAGCGCGTCCGACAAAAAGTCCTGCTCAATCTCCACGGCCTCGGTGATGATCGC 42220 Query 122607 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCT-TGAAGAGCTCCACGGCAAACT 122665 | ||| || || ||| | | | | | || |||| ||| ||||| | Sbjct 42219 CTCGATCGTGCTGGG-GTGCGCCCGCTTCTTCAGGTGGCTGAACAGCAGGCATGCAAAGT 42161 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| || ||||| || || || || || || || ||||| | ||||| ||||| | Sbjct 42160 CAGTGTGCAGTCCCTCGTCCCGCGAGATCAGCTCGTTCGAGAACGACAGACCAGGCATCA 42101 Query 122726 GACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 | || |||||||||| |||| | || | |||| || || ||||| |||||||| |||||| Sbjct 42100 GGCCACGCTTCTTCAGCCAAAAGATCGACGCA-AACGATCCGGAAAAGAAGATGCCCTCC 42042 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA-GCGAGACTTTGCATCAAACCATTT 122843 || ||| ||||| | ||||| || | |||| ||| | | | | | | ||| Sbjct 42041 ACGGCCGCGAACGCCACCAGGCGCTCCGAGAAGCTCGCGCGGCGGT-CGTTGATCCACCG 41983 Query 122844 CATTGCCCATTTCGCCTTCTTCT 122866 || ||||| | ||||||||||| Sbjct 41982 CAGCGCCCACTCCGCCTTCTTCT 41960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031403369600