Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq39 107 1e-18 seq58 100 2e-16 seq2 100 2e-16 seq75 98.7 6e-16 >seq39 Length=522589 Score = 107 bits (118), Expect = 1e-18 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||| ||||||||||| || ||||| || || || || || Sbjct 30019 AGACGGAGCACGAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGAGTACGA 29960 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || ||||||||||| || | ||||||||||||||| || | |||||| Sbjct 29959 CCGTCCTCCAGCTGCTTACCGGCAAAGATAAGACGCTGTTGGTCCGGGGGGATACCCTCC 29900 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | || ||||| || | || ||||||| | Sbjct 29899 TTGTCCTGGATC-TTGCTCTTGACGTTTTCGATCGTGTCAGACGAT-TCGACTTCCAGAG 29842 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || || || | || || ||||| | |||||| Sbjct 29841 TGATCGTCTTGCCAGTGAGGGTCTTGACAAAGACCTGCAT 29802 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||||||||||| || ||||| || || || || || |||| ||||| || Sbjct 29776 TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCAAGCTGC 29717 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | |||||||||||||| || | ||||||||||| |||| || Sbjct 29716 TTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATC-TT 29658 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | |||||||| | ||| ||||| | || || || || || || Sbjct 29657 GCTCTTGACGTTGTCGATTGTGTCCGAGGACTCGACTTCGAGCGTGATAGTCTTTCCAGT 29598 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || ||||| || ||||| Sbjct 29597 AAGAGTCTTTACAAAGATTTGCAT 29574 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||||||||||| || ||||| || || || || || |||| ||||| || Sbjct 30232 TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCAAGCTGC 30173 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | |||||||||||||| || | ||||||||||| |||| || Sbjct 30172 TTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATC-TT 30114 Query 34624 TGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | |||||||| | ||| ||||| | || || || || || || Sbjct 30113 GCTCTTGACGTTTTCGATTGTGTCCGAGGACTCGACTTCGAGCGTGATAGTCTTGCCAGT 30054 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || | |||||| Sbjct 30053 AAGGGTCTTGACGAACACCTGCAT 30030 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || || |||| || || || Sbjct 30460 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGAGTACGGCCGTCCTCCAGCTGC 30401 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | ||||||||||||||| || | ||||||||||| |||| || Sbjct 30400 TTGCCGGCAAAGATAAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATC-TT 30342 Query 34624 TGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| | ||| ||||| | || || || || || || Sbjct 30341 GCTCTTGACGTTTTCGATCGTGTCCGAGGACTCAACTTCGAGCGTGATAGTCTTGCCAGT 30282 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || ||||| | |||||| Sbjct 30281 AAGGGTCTTGACAAAGACCTGCAT 30258 >seq58 Length=446738 Score = 100 bits (110), Expect = 2e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||||||||||| || ||||| || || ||| || || |||| || || || Sbjct 376242 TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTAAGAGTGCGACCGTCCTCGAGCTGC 376183 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || || |||||||||||||| || | ||||||||||| ||| || Sbjct 376182 TTGCCGGCGAAAATCAACCGCTGTTGGTCCGGAGGAATACCCTCCTTGTC-CTGAATCTT 376124 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | || ||||| || ||||| |||| ||| || || | || ||||| || || | Sbjct 376123 AGACTTGACGATGTCGATCGTGTCGTTCG-ACTCGACCTCAAGAGTGATCGTCTTGCCCG 376065 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | | || || || || ||||||||| Sbjct 376064 TGAGTGTCTTGACGAAGATCTGCATG 376039 >seq2 Length=94478 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||||||||||||||| || ||||| || || ||| || || Sbjct 13087 AGACGCAGCACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGG 13146 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | |||||||||||||| || | |||||| Sbjct 13147 CCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCC 13206 Query 34609 TTGTCTGTGATCTTT 34623 ||||| ||||||| Sbjct 13207 TTGTCCTGGATCTTT 13221 >seq75 Length=115788 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||||| | ||| | |||||| ||||||||||| || || ||||| || Sbjct 54546 CGCCACCACGGAGACGGAGCACTAGATGGAGCGTGCTCTCCTTCTGGATATTATAGTCAC 54605 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | || || ||||| || || ||||| || | ||||||||| ||||| | Sbjct 54606 TGAGGGTGCGGCCATCCTCTAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGATCCGGGG 54665 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||||| ||| || || | ||| Sbjct 54666 GAATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGATGTCAATGGTATCGGAGGACTCG 54724 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | || || || || ||||| | || || ||||| | ||||||| Sbjct 54725 ACCTCGAGAGTGATTGTCTTGCCGGTAAGAGTCTTGACAAAGACCTGCATG 54775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729308481708