Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq39 100 2e-16 seq75 86.0 5e-12 >seq39 Length=522589 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || ||| || || || |||| |||||||| Sbjct 29776 TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCAAGCTGC 29717 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || ||||| ||||| | || | || ||| |||||| ||| || Sbjct 29716 TTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 29657 Query 39202 TGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || ||||| || || | ||||||| | ||||| || Sbjct 29656 CTCTTGA-CGTTGTCGATTGTGTCCGAGGACTCGACTTCGAGCGTGATAGTCTTTCCAGT 29598 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||||||||| Sbjct 29597 AAGAGTCTTTACAAAGATTTGCAT 29574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||||||||| || || || || || || || || || |||| || ||||| Sbjct 30460 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGAGTACGGCCGTCCTCCAGCTGC 30401 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| ||||||||||| ||||| | ||| | | ||| |||||| ||| || Sbjct 30400 TTGCCGGCAAAGATAAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 30341 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | ||| || ||||| || || | ||||||| | || || || Sbjct 30340 CTCTTGACGTTTTCGATCGTGTCCGAGGACTCAACTTCGAGCGTGATAGTCTTGCCAGTA 30281 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||||| ||||| Sbjct 30280 AGGGTCTTGACAAAGACCTGCAT 30258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| ||||||||||| || || || || || || || || || |||| || Sbjct 30011 CACGAGATGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGAGTACGACCGTCCTC 29952 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| ||||||||||| ||||| | ||| | | ||| |||||| Sbjct 29951 CAGCTGCTTACCGGCAAAGATAAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTG 29892 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||| || ||| || || |||| ||||| | || Sbjct 29891 GATCTTGCTCTTGACGTTTTCGATCGTGTCAGACGATTCGACTTCCAGAGTGATCGTCTT 29832 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || ||||||| ||||| Sbjct 29831 GCCAGTGAGGGTCTTGACAAAGACCTGCAT 29802 >seq75 Length=115788 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| ||||||||||| || || |||||||| || || || || | || || Sbjct 54565 CACTAGATGGAGCGTGCTCTCCTTCTGGATATTATAGTCACTGAGGGTGCGGCCATCCTC 54624 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 || || ||||| ||||| || |||||||| || || | ||| | || ||| |||||| Sbjct 54625 TAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTG 54684 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | |||||| ||||| || || | ||||| | || Sbjct 54685 GATCTTGCTCTTGACGATGTCAATGGTATCGGAGGACTCGACCTCGAGAGTGATTGTCTT 54744 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || ||||||| ||||| Sbjct 54745 GCCGGTAAGAGTCTTGACAAAGACCTGCAT 54774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545202133388