Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20cuniculi_20[genbank_20GCA_5F001264635.1_202015-08-11] 76 sequences; 7,459,907 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq58 113 3e-20 seq39 107 1e-18 seq2 89.7 3e-13 >seq58 Length=446738 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || |||||||| || ||||||||||| || || || || | Sbjct 376040 ATGCAGATCTTCGTCAAGACACTCACGGGCAAGACGATCACTCTTGAGGTCGAGTCGAAC 376099 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || || | || || ||| ||||| || ||| | || || || ||| Sbjct 376100 GACACGATCGACATCGTCAAGTCTAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 376159 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || |||||||| || || || |||| |||||| | |||| |||||| Sbjct 376160 CAGCGGTTGATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTTAGCGACTACAAC 376219 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 376220 ATCCAGAAGGAG 376231 >seq39 Length=522589 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | || || || ||||| || || || || ||||| ||||||||||| ||| || Sbjct 30258 ATGCAGGTCTTTGTCAAGACCCTTACTGGCAAGACTATCACGCTCGAAGTTGAGTCCTCG 30317 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| || ||| | || || || ||| Sbjct 30318 GACACGATCGAAAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 30377 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || ||||| |||| || ||| | | || |||||| Sbjct 30378 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGTACTCTGAGTGACTACAAC 30437 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 30438 ATCCAGAAGGAG 30449 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | || || || |||||||| || || ||||||||||| ||||| || || | Sbjct 29802 ATGCAGGTCTTTGTCAAGACCCTCACTGGCAAGACGATCACTCTGGAAGTCGAATCGTCT 29861 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| || ||| | || || || ||| Sbjct 29862 GACACGATCGAAAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 29921 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| || || ||||| |||| || ||| | | || |||||| Sbjct 29922 CAGCGTCTTATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGTACTCTGAGTGACTACAAC 29981 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 29982 ATCCAGAAGGAG 29993 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | ||||| || ||||| || || || || ||||| |||||||| || ||| || Sbjct 30030 ATGCAGGTGTTCGTCAAGACCCTTACTGGCAAGACTATCACGCTCGAAGTCGAGTCCTCG 30089 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| || || | || || || ||| Sbjct 30090 GACACAATCGAAAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 30149 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| ||||| | |||| |||||| Sbjct 30150 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCAGCGACTACAAC 30209 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 30210 ATCCAGAAGGAG 30221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || || || ||||| || ||||| |||||||| || ||| | Sbjct 29573 AATGCAAATCTTTGTAAAGACTCTTACTGGAAAGACTATCACGCTCGAAGTCGAGTCCTC 29632 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || || ||||| || || | || || || || Sbjct 29633 GGACACAATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 29692 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || |||| ||||| | |||| ||||| Sbjct 29693 ACAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCAGCGACTACAA 29752 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 29753 CATCCAGAAGGAG 29765 >seq2 Length=94478 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| | ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 13304 ATGCAAGTCTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 13245 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||| || ||||| || ||| | || || || ||| Sbjct 13244 GACACTATCGAGAACGTCAAGGGAAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 13185 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || || | ||||| | |||| |||||| Sbjct 13184 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTAGCGACTACAAC 13125 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 13124 ATCCAGAAGGAG 13113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009286918608