Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20furfur_20[genbank_20GCA_5F001264875.1_202015-08-11] 3,262 sequences; 13,707,196 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2836 138 3e-27 seq79 96.9 1e-14 >seq2836 Length=5357 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || ||||| || ||||| || || || || || || Sbjct 3095 CATACCACCACGCAGGCGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTC 3154 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| ||||| || || ||||| ||||| || || || || || || Sbjct 3155 ACTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGGTCCGG 3214 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || || || ||||| ||||||| ||| || | ||| Sbjct 3215 AGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTTTCAATCGTATCGGACGATTC 3274 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| || || || || || || || | |||||| Sbjct 3275 CACTTCCAGCGTGATCGTCTTACCAGTGAGCGTCTTGACGAACACCTGCAT 3325 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || ||||| || ||||| || || || || || || Sbjct 2639 CATACCACCACGCAGACGAAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTC 2698 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || ||||| ||||| || || || ||||| || || ||||| || || Sbjct 2699 GCTCAGAGTACGACCGTCTTCCAGTTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCCGG 2758 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || || || || || | || || | ||| Sbjct 2759 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGACGATTC 2818 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| || || ||||| || || || | |||||| Sbjct 2819 CACTTCCAGCGTGATCGTCTTACCAGTGAGTGTCTTGACGAACACCTGCAT 2869 Score = 105 bits (116), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||||||||| | | || || || ||||| || ||||| || || || || || || | Sbjct 2413 TACCACCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTC-G 2471 Query 140569 ATAAT-GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 ||| || || ||||| ||||| || || ||||||||||| || || || || || || Sbjct 2472 CTAAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCCGGG 2531 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || || || || || || |||| || || | || Sbjct 2532 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCCGAAGACTCG 2591 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || | |||||| Sbjct 2592 ACCTCGAGCGTGATAGTCTTGCCCGTAAGAGTCTTGACGAACACCTGCAT 2641 >seq79 Length=269 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 || |||||||||||| | | ||||| | |||||| || ||||| || ||||| || || Sbjct 132 TTGCATACCACCACGGAGACGGAGAACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTA 191 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||| | || || ||||| ||||| || || ||||||||||| ||||| || || || Sbjct 192 GTCACTGAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTC 251 Query 140624 AGGAGGAATTCCTTCTTT 140641 |||||||| || || || Sbjct 252 CGGAGGAATGCCCTCCTT 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515191070889386