Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20furfur_20[genbank_20GCA_5F001264875.1_202015-08-11] 3,262 sequences; 13,707,196 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2836 98.7 7e-16 seq3174 89.7 3e-13 >seq2836 Length=5357 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | ||||| || || || ||||| || || ||||| ||||| || || || || Sbjct 3097 ATGCAGGTGTTCGTCAAGACTCTTACGGGCAAGACTATCACGCTCGAGGTCGAGTCTTCG 3038 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | || ||||| || ||| | || || || || Sbjct 3037 GACACGATCGAGAATGTTAAGGCTAAGA-TTCAGGACAAGGAGGGTATTCCCCCGGACCA 2979 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || || | ||||| | |||| ||||| Sbjct 2978 ACAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACGCTTAGCGACTACAA 2919 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 2918 CATCCAGAAGGAATCGAC 2901 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | ||||| || || ||||| || || |||||||| || ||||| || || | Sbjct 2869 ATGCAGGTGTTCGTCAAGACACTCACTGGTAAGACGATCACGCTGGAAGTGGAATCGTCC 2810 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || || ||||| || || | || || || || Sbjct 2809 GACACTATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2750 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || ||||||||||||| || ||| | |||| |||||| Sbjct 2749 CAGCGCCTGATCTTCGCCGGTAAGCAACTGGAAGACGGTCGTACTCTGAGCGACTACAAC 2690 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2689 ATCCAGAAGGAGTCGAC 2673 >seq3174 Length=2799 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| | ||||| || ||||||||||| || ||||| || ||||| || || || || Sbjct 221 ATGCAAGTGTTCGTCAAGACCCTCACGGGTAAGACGATTACCCTCGAGGTCGAGTCGTCG 280 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 281 GACACCATCGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 339 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || || || || | ||||| | |||| ||||| Sbjct 340 ACAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGCACGCTCAGCGACTACAA 399 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 400 CATCCAGAAGGAGTCGAC 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996162217096