Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20japonica_20[genbank_20GCA_5F001600795.1_202016-03-01] 16 sequences; 8,364,631 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 150 4e-31 seq1 150 4e-31 seq7 100 6e-16 >seq3 Length=1023756 Score = 150 bits (166), Expect = 4e-31 Identities = 408/622 (66%), Gaps = 13/622 (2%) Strand=Plus/Plus Query 248824 TTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTG 248883 ||||| | |||||| ||||||||| ||||| || || || | |||||| | | | Sbjct 986627 TTCTTCGGTTTCAAGACGCTGGAGCGTTCGTACCTGCTGCGCATCAACGGCAAGGTGGCG 986686 Query 248884 GAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAG 248943 || || ||||||||| | ||||| || |||||||| || ||| ||| | | | Sbjct 986687 GAGCGCCCCCAGCACATGCTCATGCGTGTTGCTGTCGGTATCCACGGCACCGACGTTGCG 986746 Query 248944 AGCGTGCTCGAGACGTACACCGGAATGA--GTGAACGCTGGATGACACATGCCACACCGA 249001 |||| | ||||||| |||| | ||| | ||| || | || || ||| | |||| Sbjct 986747 AGCGCGATCGAGACCTACAACATGATGTCGGAGAAGGCCT--TTACGCACGCCTCGCCGA 986804 Query 249002 CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 | ||||||||||||||||| ||| ||| || |||||||| || | |||| Sbjct 986805 CTCTCTTCAACGCCGGTACACCGAACCCCCAGATGTCGTCGTGCTTCCTGGTGTGCATGA 986864 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAAT 249121 | |||||||| | || |||||||| |||||||| || | |||| |||| || Sbjct 986865 AGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGTCGTGCGCGATGATTAGCAAGA 986924 Query 249122 TCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAG 249181 || || || ||||||||| | || | |||||| | | ||||||||||| | Sbjct 986925 CGGCCGGTGGTATCGGTCTCAACATCCACTGCATCCGTGGTACCGGTTCGTACATTGCCG 986984 Query 249182 GTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCA 249241 | || || || || || | |||||| | ||| | || || | | ||| ||| Sbjct 986985 GCACGAACGGTGTTAGCAACGGTATCATTCCCATGCTCCGTGTGTACAACAACACGGCCC 987044 Query 249242 GGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAG 249295 | | || |||||| || ||||| || |||| ||||| || | || Sbjct 987045 GCTATGTCGACCAGGGTGGCAACAAGCGCC---CTGGTGCGTTTGCCATTTACCTTGAGC 987101 Query 249296 TGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCA 249355 ||||||| | || | || |||||| | ||| | |||||| |||| || ||| Sbjct 987102 CGTGGCACTCGGACGTCTTTGAGTTCATTGACCTCCGCAAGAACCACGGTAAGGAGGAGG 987161 Query 249356 TGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCA 249415 | | ||||| ||||| ||||||| ||| |||||| | || |||||||| || ||| Sbjct 987162 TTCGTGCGCGCGACCTTTTCTACGCCCTATGGGTCCCTGATCTGTTCATGAAGCGTGTCG 987221 Query 249416 AGGCCGACGGCGATTGGACGCT 249437 || | || || |||||||| Sbjct 987222 AGCAGGGTGGTGACTGGACGCT 987243 >seq1 Length=1557178 Score = 150 bits (166), Expect = 4e-31 Identities = 246/360 (68%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| |||| || |||| || ||||| || ||||||||||| || ||||||||| Sbjct 393831 CTCCCCCATATGCTCTTTTACGGCCCCCCCGGCACCGGCAAGACGTCGACGATCCTGGCG 393772 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 || || || |||| ||| | | |||| ||| ||||||||||||||||| Sbjct 393771 CTTGCGCGGCAGCTGTACGGCCCCGAGCTGATGAAGTCGCGTGTGCTCGAGCTGAACGCG 393712 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCG 254180 || ||||| ||||| | | ||||||||| || ||||||||| | || |||||||| | Sbjct 393711 TCCGACGAGCGCGGCATTGCCGTCGTCCGTGAAAAGATCAAGTCGTTTGCCAAGATGGCC 393652 Query 254181 ATTTCGTCGTTCCAACCCG------GCTGT-------------------------CCGCC 254209 | ||| || |||||||| ||| | ||||| Sbjct 393651 GTGTCGGCG-CCCAACCCGTACGTTGCTCTTTTCTCACTCAGGAATTACCCCTCGCCGCC 393593 Query 254210 TTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCT 254269 | |||| || | ||||||||||||||||||| ||||||| ||||| ||| ||| || Sbjct 393592 GTACAAGGTCATTATCCTGGACGAGGCGGACAGCATGACGCAGGACGCCCAGGGCGCGCT 393533 Query 254270 CCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT 254329 ||||| | |||||| | || | |||||| || ||||||||||||||||| || Sbjct 393532 GCGCCGCATTATGGAGCAGTACAGCCGCACGACGCGCTTCTGCCTGGTGTGCAACTATGT 393473 >seq7 Length=546283 Score = 100 bits (110), Expect = 6e-16 Identities = 188/271 (69%), Gaps = 18/271 (7%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| | || || ||||| || || |||||||| || ||| |||||||||| | Sbjct 273216 TGCTCTTCTATGGCCCCCCCGGTACGGGTAAGACGTCGACGATCATGGCGCTGGCGCAGC 273157 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 ||||| ||| || || || | | ||||||||||||||||| || ||||| | Sbjct 273156 GCCTGTATGGCAAGAATTTCAAGA---ACCATGTGCTCGAGCTGAACGCGTCGGACGACC 273100 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGTCGT 254190 |||| | ||||| || |||| | |||||||| | ||| |||| || ||| || Sbjct 273099 GCGGAATCGACGTGGTGCGCGGCCAGATCAAGTCGTTC-GCAAGCACGCG-CAACGT-GT 273043 Query 254191 TC------CAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCA 254244 || |||| | | || |||||||| | || ||||||||||||| ||| Sbjct 273042 TCAGCACGCAACAAG---ATACG---TTCAAGCTTATTGTCTTGGACGAGGCGGATGCCA 272989 Query 254245 TGACGGCCGACGCGCAGTCCGCCCTCCGCCG 254275 ||||| | ||||||| |||| |||||||| Sbjct 272988 TGACGCAGGCCGCGCAGGCCGCGCTCCGCCG 272958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766179877888