Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001265015.1_202015-08-11] 95 sequences; 7,607,075 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq31 152 6e-32 >seq31 Length=72577 Score = 152 bits (168), Expect = 6e-32 Identities = 390/589 (66%), Gaps = 10/589 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||||||| ||||| | ||| | ||||| || |||| || Sbjct 17229 CAGGCAAAGTCGGTGTGCAGACCTTCGTCACGCGAAATGAGCTCGTTCGAGAACGACAGG 17288 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || || || || || || || || || ||| Sbjct 17289 CCGGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATCGACGCAAACGAACCCGAGAAAAAG 17348 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCT-GTCATG 33757 || || || || || ||||| || | ||| | ||| | | ||| | |||| ||| Sbjct 17349 ATACCCTCCACGGCTGCAAAAGCCACAAGGCGCTC-CGAGAACGAGGCACGCTTGTCCGA 17407 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | ||||| |||||||| | || || || ||||| || || ||||| Sbjct 17408 GATCCAGCGCAGGGCCCAGTCGGCCTTTTGCTTGACGACGGGGATCGTCTCGATCGCATT 17467 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||||||| | | | || | || || ||||||| || ||| | Sbjct 17468 AAAGAGATACTCGCGCTGCTCCGGCTCACGGATGTAGGTGTCGATCAGGAGCGAGTACGT 17527 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 |||||| |||||||| || || |||||||| ||||| || || | ||||||| Sbjct 17528 TTCCGAGTGAATGTTCTCCATCATAATCTGAAAGCCGTAAAAGCAGCGGGCCTCGGCCGC 17587 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 |||||| || | | ||| || || | | || ||||| || || ||||| ||| || Sbjct 17588 CTGCACCTCGGCGCTAAAGCGCTCGACCAGGTTCTCATTGACGATGCCATCCGAGGCGGC 17647 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCC 34053 ||| ||||||| || || | | ||| | || | || ||| | | | || Sbjct 17648 AAAGAACGCCAGGACGTGGCTCACAAAGTGGCGCTCAT-TGTCGTTCATGCGGTGGTCCC 17706 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || | | ||||| || | |||| ||||| | ||||| || || ||||| |||| Sbjct 17707 AGTCGTGCAGGTCTTTCGACAGGTCCATCTCTTCAGCGGTCCAGAACGAGGCCTCCGCCT 17766 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | || ||||| | |||||| || || || | || ||||||| ||||| Sbjct 17767 TCTTGTACATCTGCCAGATCTCGTGGTAGCGAATAGGGAAAAGGACAAA 17815 Score = 140 bits (154), Expect = 4e-28 Identities = 439/673 (65%), Gaps = 8/673 (1%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| |||||| || || | | || || || |||||| || || || ||| Sbjct 29669 GGGCACATCAGCGACCAGTCCCCATTCTGCTCAACGCGACGCATAAACAGGTCGGGGATC 29610 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || | || | || | || | ||| || || || ||||| || Sbjct 29609 CACAGCGCGAGGAACAAGTCGCGTGCGCGCACTTCTTCCTTGCCGTGGTTCTTGCGCAGG 29550 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 |||| || | | | ||| || ||||| || |||| ||| ||||| | | || || Sbjct 29549 TCGATAAATTCAAACACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCGCCTGGG 29490 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || |||||||| | ||| | ||||| || || || || | | ||| || Sbjct 29489 CGCTTGTTGCCGCCCTGATCCACGTAGCGCGCGGTATTGTTGTACACACGAAGCATGGGC 29430 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | ||||||||| | || || || || | || || || | |||||||| || Sbjct 29429 ACAATACCGTTACTCACGCCGTTTGTGCCAGCAATGTACGAGCCCGTCGCACGAATGTTG 29370 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGT 63592 || || || || || || ||| | || ||||| | || || ||| || | ||| Sbjct 29369 TGGATGTTCAGGCCAATGCCACCGGCCGTCTTGGAGATCATGGCACA-CGTCTTGAGCGT 29311 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 |||||| ||||| || || ||| || |||| | | || || || ||||| || Sbjct 29310 GTCATAAATGCCCTCAATCGAATCGTCCTTCATACTGACAAGGAAGCACGACGACATCTG 29251 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | | | || |||||||| || | ||| || || |||||||| || || || || Sbjct 29250 AGGGTGGGGCGTACCCGCATTGAACAGGGTTGGCGACGCGTGCGTGAAAGCCTTCTCGGA 29191 Query 63713 AA-GTAGATTGTACGTCTCAATAGCTGAGTCT--ATATCCCATTGATGAATTCCTACTGC 63769 | |||| |||||||||||||| || | ||| |||||| || || || || || Sbjct 29190 CATGTAG-TTGTACGTCTCAATGGC--ACTCTTGATATCCTCGCCGTGGATACCAACAGC 29134 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 |||||||| | |||||||||||| | || ||| || ||| || || || ||| Sbjct 29133 CACACGCATGAGCATGTGCTGAGGGCGCTCGGCAACCTTACCGTTGATCCGCAGCAGGTA 29074 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || || | || || || || ||| ||||||| |||||| || |||||||| | Sbjct 29073 AGAGCGCTCAAGCGTCTTGAATCCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAAATGAC 29014 Query 63890 AACCGAATTGAGC 63902 | |||| | |||| Sbjct 29013 AGCCGAGTCGAGC 29001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816852091600