Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001265015.1_202015-08-11] 95 sequences; 7,607,075 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq31 149 8e-31 >seq31 Length=72577 Score = 149 bits (164), Expect = 8e-31 Identities = 392/593 (66%), Gaps = 18/593 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||||||||| || || | ||| | ||||| || |||| || Sbjct 17229 CAGGCAAAGTCGGTGTGCAGACCTTCGTCACGCGAAATGAGCTCGTTCGAGAACGACAGG 17288 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||| ||||| || ||||| || || |||||||| || || || || ||| Sbjct 17289 CCGGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATCGACGCAAACGAACCCGAGAAAAAG 17348 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC-GGCAC---TGTCATG 42240 || || || || || ||||| || | ||| | ||| | | ||| ||||| |||| Sbjct 17349 ATACCCTCCACGGCTGCAAAAGCCACAAGGCGCTC-CGAGAACGAGGCACGCTTGTCCGA 17407 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||| |||||||| | || || || ||||| || || ||||| Sbjct 17408 GATCCAGCGCAGGGCCCAGTCGGCCTTTTGCTTGACGACGGGGATCGTCTCGATCGCATT 17467 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTA----TCGATCAAAAGACTAT 42356 ||||||||| | | | || | || ||||| ||||||| || | Sbjct 17468 AAAGAGATA----CTCGCGCTGCTCCGGCTCACGGATGTAGGTGTCGATCAGGAGCGAGT 17523 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 || |||| || |||||||| || || |||||||| ||||| || || | |||||||| Sbjct 17524 ACGTTTCCGAGTGAATGTTCTCCATCATAATCTGAAAGCCGTAAAAGCAGCGGGCCTCGG 17583 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 |||| || || | | ||| || || | | || || || || || || || || Sbjct 17584 CCGCCTGCACCTCGGCGCTAAAGCGCTCGACCAGGTTCTCATTGACGATGCCATCCGAGG 17643 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTA 42532 | ||||| ||||||| || || | | ||| | || | | ||| || | Sbjct 17644 CGGCAAAGAACGCCAGGACGTGGCTCACAAAGTGGCGCTCAT-TGTCGTTCATGCGGTGG 17702 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| || | | ||||| || | || | ||||| | ||||| || || || || Sbjct 17703 TCCCAGTCGTGCAGGTCTTTCGACAGGTCCATCTCTTCAGCGGTCCAGAACGAGGCCTCC 17762 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||||| || ||||| | |||||| || || || |||| ||||||| ||||| Sbjct 17763 GCCTTCTTGTACATCTGCCAGATCTCGTGGTAGCGAATAGGGAAAAGGACAAA 17815 Score = 129 bits (142), Expect = 8e-25 Identities = 354/535 (66%), Gaps = 8/535 (1%) Strand=Plus/Minus Query 72126 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTG 72185 ||| || ||||| || |||| ||| ||||| | | || || || ||||| || ||||| Sbjct 29532 ATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCGCCTGGGCGCTTGTTGCCGCCCTG 29473 Query 72186 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 72245 ||| | ||| | ||||| || || || || | | ||| || | |||||| || | Sbjct 29472 ATCCACGTAGCGCGCGGTATTGTTGTACACACGAAGCATGGGCACAATACCGTTACTCAC 29413 Query 72246 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTAT 72305 || || || || | || || || | |||||||| ||| || || || || Sbjct 29412 GCCGTTTGTGCCAGCAATGTACGAGCCCGTCGCACGAATGTTGTGGATGTTCAGGCCAAT 29353 Query 72306 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTA 72364 || || ||| | || ||||| | || || ||| || | ||| ||||| |||||||| | Sbjct 29352 GCCACCGGCCGTCTTGGAGATCATGGCACA-CGTCTTGAGCGTGTCATAAATGCCCTCAA 29294 Query 72365 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 72424 | ||| ||| |||| | | || || || ||||| || | | || |||| Sbjct 29293 TCGAATCGTCCTTCATACTGACAAGGAAGCACGACGACATCTGAGGGTGGGGCGTACCCG 29234 Query 72425 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTC 72483 |||| || | ||| || || |||||||| || || || |||| |||| ||||||||| Sbjct 29233 CATTGAACAGGGTTGGCGACGCGTGCGTGAAAGCCTTCTCGGACATGTAG-TTGTACGTC 29175 Query 72484 TCAATAGCTGATTCT--ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 ||||| || | ||| |||||| || || || || || |||||||| | ||| | Sbjct 29174 TCAATGGC--ACTCTTGATATCCTCGCCGTGGATACCAACAGCCACACGCATGAGCATGT 29117 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 ||||||| | || | | ||| || || || || ||| || || | || | Sbjct 29116 GCTGAGGGCGCTCGGCAACCTTACCGTTGATCCGCAGCAGGTAAGAGCGCTCAAGCGTCT 29057 Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 | || || ||| ||||||| |||||| || |||||||| | | |||| | ||| Sbjct 29056 TGAATCCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAAATGACAGCCGAGTCGAG 29002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138403022200