Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001265015.1_202015-08-11] 95 sequences; 7,607,075 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq31 219 5e-52 seq56 102 1e-16 >seq31 Length=72577 Score = 219 bits (242), Expect = 5e-52 Identities = 909/1417 (64%), Gaps = 33/1417 (2%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || || || ||| | || || |||||| ||||||| |||||||||||||| Sbjct 30521 AACTCGCCAGCCAGCACGCGACGCATGTAAATGTTGCTCGTGTAGGGCTCAAAGCACTCG 30462 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 || || | ||| ||| || |||||||| ||||| ||||||||||| || |||| Sbjct 30461 TTAAAGCCAAGGATCTGGCTCGTCGAGGCTGTCGGCATCGGTGCCATGAGCAGCGAGTTG 30402 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTG 116053 || ||||| | ||| | ||||||| | | ||| | | ||| | | | | Sbjct 30401 CGAAGACCGTGCTGTGCAATCTGGGCCTTGAGCGAGGTCCAATCCCATAGGTCCG-TCGG 30343 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 | | | | |||||| ||| | || | | || || || || || ||||| | | Sbjct 30342 TGT-GCGGTTCCACATGTCATATTGCAAAAGGCCCTGCGAGGCAGGACTGCCCTCGTAGG 30284 Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173 |||| || ||||| | | |||||| ||| |||| ||| |||||||| || || | Sbjct 30283 TCTCGTAGGGGCCGTACTCGGCCGCCAGCTCGCAGCTGCGCTCAAGGGCTGCATGGTAGA 30224 Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 |||||||||| || | | |||| ||||| | | ||||||| || | | Sbjct 30223 TTGTCTCAAATATTTGCACGTTCAGGAGACGAGCCTCCTGGCTGTCAAACG-GATAGCCC 30165 Query 116234 A-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | ||||| | ||||| || || || ||||||| || || ||||| || | |||| Sbjct 30164 ATGATCATAAAAGCGTCCGCCAGGCCCTGAACACCGATACCGATGGGGCGGTGGCGCATA 30105 Query 116293 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 116352 || || || ||| |||||||||| || | || | ||||| | | || || || Sbjct 30104 TTCGAGCGACGTGCGCTCTCCACGGGGTAGTAGTTAATGTCGATGATGCGGTTCAGGTTC 30045 Query 116353 TTGGTGACAACCTTTGTGATTTCAT----------GAAGCTTTTCGTAATCAAAACTGCG 116402 ||| || ||||| | | || | |||| | | ||| | | | || Sbjct 30044 TTGCACACCACCTTCGACACATCGTGCAGGCGCTGGAAGTTGTACGTCTTGGACGC-GCC 29986 Query 116403 AGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 116462 ||| ||||| | | || | || || ||||| || ||||| || || || | ||||| Sbjct 29985 AGTGCCTTCA---ATAAACGTCGGCAGAGCGATCGAGGCCAGGTTGCATACGGCCGTCTC 29929 Query 116463 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 116522 ||| ||||||| || || || || |||| || || |||||||| ||||||| Sbjct 29928 TTCCGGCGAGCTGTACTCGATGATCTCGGTGCACAGGTTGGAGCTCTTAATTGTGCCCAG 29869 Query 116523 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGT 116582 |||||| || || ||| ||| || |||||||| || || | || | ||||| Sbjct 29868 GTTCTTCTGGTTGCTCTTGCGGTTGGCCGAGTCCTTGTACAGGATGAACGGATTACCCGT 29809 Query 116583 CTCCGTTTGGGACTTGAGAATAGCCTTCCA-TACATCGGCGGCTGGCACAGTGGCGTTGG 116641 ||| | |||| || | ||| || | ||| || || ||| || | |||| | || | Sbjct 29808 CTCAATCTGGGCCTCCAAAATGGCGTACCACAACTTCTGCGCCTTG-ACAGAGCGCTTAG 29750 Query 116642 CTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCT 116700 | |||||||| |||||| ||| | || |||||||| || ||| ||| || Sbjct 29749 CACGCCCCTCACGCTCGTAACGCTCGTACAAAGCTTCAAACTCCTC-GCCATAGCAGTCA 29691 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 || || || || || | || || | || ||||| | ||| || |||||| || Sbjct 29690 GACAGACCGGGGCACTCGGCAGGGCACATCAGCGACCAGTCCCCATTCTGCTCAACGCGA 29631 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820 ||| || ||||| |||||||| ||||| ||| | || || ||| ||||||| Sbjct 29630 CGCATAAACAGGTCGGGGATCCACAGCGCGAGGAACAAGTCGCGTGCGCGCACTTCTTCC 29571 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || |||| || | ||| || | | ||||| |||||| || |||||| Sbjct 29570 TTGCCGTGGTTCTTGCGCAGGTCGATAAATTCAAACACATCCGAGTGCCAGGGCTCCAGG 29511 Query 116881 TACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937 || | || | | || ||| || |||| | || || | ||| || | Sbjct 29510 TAAATGGCAAAGGCGCCTGGGCGCTTGTTGCCGCCCTGATCCACGTAGCGCGCGGTATTG 29451 Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TAC 116995 || | || |||||||| || | ||||| | | ||| ||||| || || ||| Sbjct 29450 TTGTACACACGAAGCATGGGCACAATACCGTTACTCACGCCGTTTGTGCCAGCAATGTAC 29391 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 ||| | | || | | | |||||||| || ||||| || || ||| ||| |||| Sbjct 29390 GAGCC--CGTCGCACGAATGTTGTGGATGTTCAGGCCAATGCCACCGGCCGTCTTGGAGA 29333 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | || ||| | |||| || | || || || || ||||| || |||| | || Sbjct 29332 TCATGGCACACGTCTTGAGCGTGTCATAAATGCCCTCAATCGAATCGTCCTTCATACTGA 29273 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 |||||||| |||||| || || || ||||| || ||||| |||||||| | || Sbjct 29272 CAAGGAAGCACGACGACATCTGAGGGTGGGGCGTACCCGCATTGAACAGGGTTGGCGACG 29213 Query 117176 CGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCT 117234 |||| |||| | | | | |||||| | | ||| ||||| | | || || || Sbjct 29212 CGTGCGTGAA-AGCCTTCTCGGACATGTAGTTGTACGTCTCAATGGCACTCTTGATATCC 29154 Query 117235 TCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 || ||||| ||||| | | || ||||| | ||||| Sbjct 29153 TCGCCGTGGATACCAACAGCCACACGCATGAGCATGT 29117 Score = 111 bits (122), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||| |||||||| || ||||| || |||||||| |||| || Sbjct 17232 GCAAAGTCGGTGTGCAGACCTTCGTCACGCGAAATGAGCTCGTTCGAGAACGACAGGCCG 17291 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| ||||||||||| | |||||| |||| ||| || || ||||| ||||| Sbjct 17292 GGCATGAGGCCCCGCTTCTTGAGCCAGAAGATCGACGCAAACGAACCCGAGAAAAAGATA 17351 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCA-A 127697 |||||||| || || || | || ||||| | || || || || |||| | | Sbjct 17352 CCCTCCACGGCTGCAAAAGCCACAAGGCGCTCCGAGAACGA--GGCACGCTTGTCCGAGA 17409 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| || ||||| | ||||||| || || |||| |||| |||||| | || Sbjct 17410 TCCAGCGCAGGGCCCAGTCGGCCTTTTGCTTGACGACGGGGATCGTCTCGATCGCATTAA 17469 Query 127758 AGAG 127761 |||| Sbjct 17470 AGAG 17473 >seq56 Length=579417 Score = 102 bits (112), Expect = 1e-16 Identities = 222/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || ||||| | |||| || || | |||| ||| || ||||| ||||| || Sbjct 259146 CTTGAGCAGCGATGGATAAAAGTGGTCGAGGAAGTTGATGATCAGCCCCTTGATGTGGGA 259205 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACA-T 176714 ||||| |||| |||||||| ||||| || | || ||||| || || || | Sbjct 259206 GCCATCAAAATCCTGGTCCGTCATGATCATCAGGCTGCCGTAGCGCAGGCCGTCCACGCT 259265 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | || || |||| || || || || |||| ||| | ||| | | |||| |||| | Sbjct 259266 CGTG-TACACCTTGCCGTGCTGCAGGCCCAGAATTTCCTTAATGTGCTTGATCTCTGCAT 259324 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| ||| | || || || || ||||| |||| ||||| || || | Sbjct 259325 TCTTCATGATTTGATCGTGAGATGCCTCTCGTACATTGAGCAACTTACCGCGCAGCGGAA 259384 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 |||||||||| ||||| || ||| | || ||||| ||| || || | ||| || | Sbjct 259385 ACACACCGTACGCGTCACGGCCCACCTCGCTGATACCAGAAACGGCAAGCGCCTTGGCCG 259444 Query 176895 AATCACCCTCCGTCACGATGAGCGTACACT 176924 | ||||| || || | ||| ||||| |||| Sbjct 259445 AGTCACCTTCTGTGAGGATCAGCGTGCACT 259474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506471460200