Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 111 3e-19 seq8 86.0 1e-11 >seq3 Length=1323904 Score = 111 bits (122), Expect = 3e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 319804 TCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC 319863 || || |||||||| ||||| || ||||| || || | || | |||||||| Sbjct 378788 TCCGAACCGTCGAGGTCGTGCTCGACGTACCAGGTGCGCACCTCCTCGGGCGAGGGGAAG 378847 Query 319864 CCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGC 319923 || || | |||||||||| || |||||||||||||| || ||||| | ||||| | Sbjct 378848 CCCTCGACCTGGCCGTTCTGGATGGCGCGCATCAGGGTCGACTTACCGGAACCGTTACGA 378907 Query 319924 CCACACAGACCGTAGCGGTTTCCGCGTTTCAG--GTTGAACCGCGTGTTGTTCAGAAGAA 319981 ||||||||||||||||||| || || || || | || || || ||||||| |||| Sbjct 378908 CCACACAGACCGTAGCGGTGGCCACGCTTAAGACGCAGAGTGGC-TG-TGTTCAGCAGAA 378965 Query 319982 TTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 | || |||| || || || || || | || | ||||| |||||||| Sbjct 378966 TCTTGGCACCGTAGGCGAGCGAGAACTGGCAGTTGCACAGGTCCTCACC 379014 >seq8 Length=423986 Score = 86.0 bits (94), Expect = 1e-11 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 230370 CGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGT-- 230427 ||| || || || | |||||||| || || || | | || |||| || |||| Sbjct 365586 CGACACAGTGAACCGCATCATTACGGAGGCTGTGGCCATTGAGCAGGACTT--TTTGACC 365529 Query 230428 GACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGA 230486 |||||| | || ||| | || |||||||||||||| || ||| | |||||||| || Sbjct 365528 GACGCTCTGCCC-GTCTCGCTGATTGGCATGAACGCCCGCCTGATGTGCCAGTACATTGA 365470 Query 230487 ATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAA 230546 || || |||||||| | | || || || || || |||||||| | ||| Sbjct 365469 GTTTGTGGCCGACCGTCTGCTCGTCAACCTCGGCAACCCTAAGCACTACAACTCGACGAA 365410 Query 230547 CCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 ||||||| ||||||||| ||||||||| || || ||| | ||||| ||||| Sbjct 365409 TCCCTTTGACTTTATGGAGAACATTTCGCTGCAGGGCAAGTCGAACTTTTTCGA 365356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823823806190