Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8 147 2e-30 seq4 109 5e-19 seq6 100 2e-16 seq1 87.8 2e-12 >seq8 Length=423986 Score = 147 bits (162), Expect = 2e-30 Identities = 250/364 (69%), Gaps = 19/364 (5%) Strand=Plus/Minus Query 44942 ATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAAC 45001 |||||||| ||| |||| ||||| | |||||| | |||||||||||||||||| || Sbjct 365690 ATGCCCGGCCTGTCGTTCTCGAACGAGCTCATTTCGCGTGACGAAGGTCTGCACACCGAC 365631 Query 45002 TTTGCCTGCCTCTACTATAATACGAGAGTCGATCAAAAGTTGGACGCGCCCACC------ 45055 |||||||||||| || || | | | ||| | |||||||||| Sbjct 365630 TTTGCCTGCCTCCTCTTTAG---------CCACCTGAAGAAG--CGCGCCCACCCCGACA 365582 Query 45056 --GTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTC 45113 || ||| ||| | | || || |||||||| ||| ||| ||||| | || |||| Sbjct 365581 CAGTGAACCGCATCATTACGGAGGCTGTGGCCATTGAGCAGGACTTTTTGACCGACGCTC 365522 Query 45114 TGCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCG 45173 |||||| ||| || | || |||||||| ||||| | |||||||||||||||| | Sbjct 365521 TGCCCGTCTCGCTGATTGGCATGAACGCCCGCCTGATGTGCCAGTACATTGAGTTTGTGG 365462 Query 45174 CCGATCGTCTTCTCGTCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCG 45233 |||| ||||| |||||| | | | || ||| ||| | | ||| || || | Sbjct 365461 CCGACCGTCTGCTCGTCAACCTCGGCAACCCTAAGCACTACAACTCGACGAATCCCTTTG 365402 Query 45234 AGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCG 45293 | |||||| | || |||||| || ||||||| | || ||||| ||| ||||||| || Sbjct 365401 ACTTTATGGAGAACATTTCGCTGCAGGGCAAGTCGAACTTTTTCGAGCGCCGCGTCGCCG 365342 Query 45294 AATA 45297 | || Sbjct 365341 ACTA 365338 >seq4 Length=1186707 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || ||||||||||| ||||||| || || ||||||||||| || || ||| | Sbjct 399055 CTCCTTCTGAATGTTGTAGTCGCTCAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAA 398996 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| |||||||| || || || || || ||||||||||| || || || || | Sbjct 398995 GATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 398936 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||| | | || ||||| | || | ||| ||||| |||||||| || || Sbjct 398935 GTCGATCGTGTCTGAGGATTCAACCTCAAGCGTGATCGTCTTGCCAGTCAGAGTCTTGAC 398876 Query 118727 AAAAATCTGCATGGC 118741 || || |||||||| Sbjct 398875 GAAGATTTGCATGGC 398861 >seq6 Length=615380 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| |||||| |||||| ||||| || || || | Sbjct 241370 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAA 241429 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || ||||| || || || || || ||||||||||| || || || || | Sbjct 241430 GATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 241489 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||| | ||| ||||| | ||| | ||| || |||||||| || || || Sbjct 241490 CTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGAC 241549 Query 118727 AAAAATCTGCATGGC 118741 || | |||||||| Sbjct 241550 GAACACTTGCATGGC 241564 >seq1 Length=1489088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| || || || || ||||| || || ||| | Sbjct 496540 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCGAA 496599 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| |||||||| || || ||||| |||||||||||||| |||||| || || | Sbjct 496600 GATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTGACATT 496659 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || | ||||||| |||||| || | || | ||| ||||| || || Sbjct 496660 GTCAATCGTGTCCGACGACTCGACTTCCAGCGTGATCGTCTTGCCAGTGAG 496710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830331264996