Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 141 2e-28 seq8 138 2e-27 >seq3 Length=1323904 Score = 141 bits (156), Expect = 2e-28 Identities = 335/504 (66%), Gaps = 8/504 (2%) Strand=Plus/Minus Query 218506 ATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGT 218561 || ||| || | ||||| ||| |||||||||| || || ||||| || | || || | Sbjct 259004 ATTCCCATCTCGGACTTTATCAACAAGGAGCTGATCCTCTTCTCCATGGCCG-ATAATAT 258946 Query 218562 GGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTT 218621 || || ||||| || |||||||| || | |||||| ||||| || | || || Sbjct 258945 C---CGCTCCATTCCTAGTGTGGTGGACGGTTTGAAGCCAGGACAGCGCAAAGTGCTGTT 258889 Query 218622 TGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGT 218681 || | |||||||| ||||| |||||| ||||| ||| | ||||| || Sbjct 258888 TGGCTGCTTCAAGCGCAACCTAAAGACAGAAATCAAGGTGCAGCAGCTGCAGGGTTACGT 258829 Query 218682 ATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCAT 218741 || ||| | | ||||| || ||||| ||||||||| | ||||||| || | Sbjct 258828 CTCTGAACACACGGCGTACCACCATGGTGATCAGAGTCTGGTGATGACCATTGTGGGACT 258769 Query 218742 GGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 || ||||||| | ||||| ||||| |||| |||| | || || || |||||||| Sbjct 258768 CGCGCAGGACTTTTGCGGCAGCAACAATGTGAATATGCTCATGCCGAATGGCCAGTTTGG 258709 Query 218802 TTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTC 218861 | ||| |||||||||| ||| || ||| | || ||||| ||| || | Sbjct 258708 CACGCGTAGTATGGGTGGAAAAGATGCGGCCAGCGCCCGTTACATCTTCACAGCCGTGCC 258649 Query 218862 GCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGA 218921 || | ||||| ||| | ||| ||| ||||||| || || || ||| | || || Sbjct 258648 GCGTATTACGCGACAGCTCTTCCATCCCAAGGATGATGCACTGCTCAACTATTTGGACGA 258589 Query 218922 CGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAA 218981 ||||| |||||||| || ||||||||||| | | || ||||| | || Sbjct 258588 GGATGGCCAGAGCATTGAGCCGGAATGGTATGTGCCAGTCGTACCCCAGGTGCTCCTGAA 258529 Query 218982 TGGTGCCAATGGTATCGGGACAGG 219005 ||| ||| |||| ||||| || || Sbjct 258528 TGGCGCCGATGGCATCGGCACGGG 258505 Score = 102 bits (112), Expect = 2e-16 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| |||||||||| ||||| |||| || || || || || || || Sbjct 378186 GGCCCCAACGGTTCGGGTAAGTCGACCCTGGTCAAGCTCGTGGTCGGTGACACGGAGCCC 378127 Query 280239 A-CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296 | || |||| ||| |||||||| |||||| || ||| | ||| ||||||||||||| Sbjct 378126 AACTC--GGGTGAGTTGTGGAAGCACCCCAACCTGGTGATTGGTTATGTCGCTCAGCACG 378069 Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 | ||||||||||| || | |||||||||| ||| || Sbjct 378068 CGTTCCACCACATTGACCAGCACCTGGACAAGACGCC 378032 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 |||||||||||||||||||||||||| ||||| |||| ||| |||| | ||||| Sbjct 378660 CTGTCGGGTGGTTGGAAGATGAAGCTCGCCCTGGCTCGTGCCGTTCTGTTCAAGGCCGAC 378601 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 | || ||||| |||||||| ||||||||| ||||| | |||||| |||||| Sbjct 378600 ATTCTGCTGCTCGATGAGCCGACCAACCACTTGGACGTGATCAACGTGGCCTGG 378547 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| | ||||||||||| || |||| ||||||||||| ||| Sbjct 379014 GGTGAGGACCTGTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCCAAGATTCTGCTGAAC 378955 Query 279405 TCTACCCGCCTCAACATC--AAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAG 279462 | || ||| | || ||||||||| |||| || ||||| |||| || || Sbjct 378954 ACAGCC--ACTCTGCGTCTTAAGCGTGGCCACCGCTACGGTCTGTGTGGTCGTAACGGTT 378897 Query 279463 CGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACG 279522 | |||||| || || ||||||||||| ||||| ||| | || || || || Sbjct 378896 CCGGTAAGTCGACCCTGATGCGCGCCATCCAGAACGGCCAGGTCGAGGGCTTCCCCTCGC 378837 Query 279523 CATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 | ||||| | || ||| || ||||||||| ||||| Sbjct 378836 CCGAGGAGGTGCGCACCTGGTACGTCGAGCACGACCTCGAC 378796 >seq8 Length=423986 Score = 138 bits (152), Expect = 2e-27 Identities = 545/838 (65%), Gaps = 31/838 (4%) Strand=Plus/Plus Query 251554 ACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAG 251613 || ||||| ||||| || || |||||||||| ||| || || |||||| ||||| ||| Sbjct 365347 ACGCGGCGCTCGAAAAAGTTCGACTTGCCCTGCAGCGAAATGTTCTCCATAAAGTCAAAG 365406 Query 251614 GGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACA 251673 || || || | ||||| ||||| || | ||| || |||| | ||||| |||||| Sbjct 365407 GGATTCGTCGAGTTGTAGTGCTTAGGGTTGCCGAGGTTGACGAGCAGACGGTCGGCCACA 365466 Query 251674 AACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGC 251732 ||||| | ||||| | |||||| | |||||||||||||| ||| | || | || Sbjct 365467 AACTCAATGTACTGGCACATCAGGCGGGCGTTCATGCCAATCA-GCGAGACGGGCAGAGC 365525 Query 251733 CTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGC 251792 || | || |||| || |||| || |||||| | || |||| ||||| Sbjct 365526 GTCGGTCAAAAAGTCCTGCTCAATGGCCACAGCCTCCGTAATGATGCGGTTCA-CTGTGT 365584 Query 251793 CAGAGACAGCTTG-TTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGAC 251851 | | | || | |||| ||| | | ||||| | |||| | |||||||| Sbjct 365585 CGGGGTGGGCGCGCTTCTTCAGGTGGCTAAAGAGGAGGCAGGCAAAGTCGGTGTGCAGAC 365644 Query 251852 CCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCC 251911 | ||||| || |||| |||||| || | |||||| ||||| | || || ||| Sbjct 365645 CTTCGTCACGCGAAATGAGCTCGTTCGAGAACGACAGGCCGGGCATGAGGCCCCGCTTCT 365704 Query 251912 TGAGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCAT 251970 ||||||||||||| | ||| ||| || || ||||| | | |||||| || | | Sbjct 365705 TGAGCCAGAAGATCGACGC-AAACGAACCCGAGAAAAAGATACCCTCCACGGCTGCAAAA 365763 Query 251971 GCAACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCAT 252024 || ||||||||||| | ||||| |||||| ||| | | | | ||||| Sbjct 365764 GCCACAAGGCGCTCCGAGAACGAGGCACGCTTGTC---CGAGATCCAGCGCAGGGCCCAG 365820 Query 252025 GCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCG 252084 | ||||| | || ||||||| || ||||| |||| ||||||| | | ||| | Sbjct 365821 TCGGCCTTTTGCTTGACGACGGGGATCGTCTCGATCGCATTAAAGAGATACT--CGCGCT 365878 Query 252085 GCATCG--TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATT 252142 || || || |||| | || | |||||| |||||| | ||||| || ||| | Sbjct 365879 GCTCCGGCTCACGGATGTAGGTGTCGATCAGGAGCGAGTACGTTTCCGAGTGAATGTTCT 365938 Query 252143 CGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCG-GTG-ACTTCCGTGGA 252200 | | | |||| | |||| || || ||| | || || || || || | | Sbjct 365939 CCATCATAATCT-GAAAGC-CGTAAAAGCAGCGGGCCTCGGCCGCCTGCACCTCGGCGCT 365996 Query 252201 AAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAA 252259 |||| | | | |||||| | || |||||||| | | |||||||| |||| || Sbjct 365997 AAAGCGCTCGACCAGGTTCTCATTGACGATGCCATCCGAGGCGGCAAAGAACGCCAGGAC 366056 Query 252260 TGGTCTTGATGAAGTGACGCTCATCGTCGT---TGAGCTTGTCACGCCAGTCGGCAATGT 252316 | | | | ||||| ||||||| ||||| || | | ||| ||||||| | || Sbjct 366057 GTGGC-TCACAAAGTGGCGCTCATTGTCGTTCATGCGGTGGTC---CCAGTCGTGCAGGT 366112 Query 252317 CCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | | ||| | ||||| | |||||||| | || | |||||||||||||||| Sbjct 366113 CTTTCGACAGGTCCATCTCTTCAGCGGTCCAGAACGAGGCCTCCGCCTTCTTGTACAT 366170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836628800933