Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8 219 5e-52 seq3 102 1e-16 >seq8 Length=423986 Score = 219 bits (242), Expect = 5e-52 Identities = 909/1417 (64%), Gaps = 33/1417 (2%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || || || ||| | || || |||||| ||||||| |||||||||||||| Sbjct 378915 AACTCGCCAGCCAGCACGCGACGCATGTAAATGTTGCTCGTGTAGGGCTCAAAGCACTCG 378856 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 || || | ||| ||| || |||||||| ||||| ||||||||||| || |||| Sbjct 378855 TTAAAGCCAAGGATCTGGCTCGTCGAGGCTGTCGGCATCGGTGCCATGAGCAGCGAGTTG 378796 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTG 116053 || ||||| | ||| | ||||||| | | ||| | | ||| | | | | Sbjct 378795 CGAAGACCGTGCTGTGCAATCTGGGCCTTGAGCGAGGTCCAATCCCATAGGTCCG-TCGG 378737 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 | | | | |||||| ||| | || | | || || || || || ||||| | | Sbjct 378736 TGT-GCGGTTCCACATGTCATATTGCAAAAGGCCCTGCGAGGCAGGACTGCCCTCGTAGG 378678 Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173 |||| || ||||| | | |||||| ||| |||| ||| |||||||| || || | Sbjct 378677 TCTCGTAGGGGCCGTACTCGGCCGCCAGCTCGCAGCTGCGCTCAAGGGCTGCATGGTAGA 378618 Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 |||||||||| || | | |||| ||||| | | ||||||| || | | Sbjct 378617 TTGTCTCAAATATTTGCACGTTCAGGAGACGAGCCTCCTGGCTGTCAAACG-GATAGCCC 378559 Query 116234 A-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | ||||| | ||||| || || || ||||||| || || ||||| || | |||| Sbjct 378558 ATGATCATAAAAGCGTCCGCCAGGCCCTGAACACCGATACCGATGGGGCGGTGGCGCATA 378499 Query 116293 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 116352 || || || ||| |||||||||| || | || | ||||| | | || || || Sbjct 378498 TTCGAGCGACGTGCGCTCTCCACGGGGTAGTAGTTAATGTCGATGATGCGGTTCAGGTTC 378439 Query 116353 TTGGTGACAACCTTTGTGATTTCAT----------GAAGCTTTTCGTAATCAAAACTGCG 116402 ||| || ||||| | | || | |||| | | ||| | | | || Sbjct 378438 TTGCACACCACCTTCGACACATCGTGCAGGCGCTGGAAGTTGTACGTCTTGGACGC-GCC 378380 Query 116403 AGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 116462 ||| ||||| | | || | || || ||||| || ||||| || || || | ||||| Sbjct 378379 AGTGCCTTCA---ATAAACGTCGGCAGAGCGATCGAGGCCAGGTTGCATACGGCCGTCTC 378323 Query 116463 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 116522 ||| ||||||| || || || || |||| || || |||||||| ||||||| Sbjct 378322 TTCCGGCGAGCTGTACTCGATGATCTCGGTGCACAGGTTGGAGCTCTTAATTGTGCCCAG 378263 Query 116523 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGT 116582 |||||| || || ||| ||| || |||||||| || || | || | ||||| Sbjct 378262 GTTCTTCTGGTTGCTCTTGCGGTTGGCCGAGTCCTTGTACAGGATGAACGGATTACCCGT 378203 Query 116583 CTCCGTTTGGGACTTGAGAATAGCCTTCCA-TACATCGGCGGCTGGCACAGTGGCGTTGG 116641 ||| | |||| || | ||| || | ||| || || ||| || | |||| | || | Sbjct 378202 CTCAATCTGGGCCTCCAAAATGGCGTACCACAACTTCTGCGCCTTG-ACAGAGCGCTTAG 378144 Query 116642 CTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCT 116700 | |||||||| |||||| ||| | || |||||||| || ||| ||| || Sbjct 378143 CACGCCCCTCACGCTCGTAACGCTCGTACAAAGCTTCAAACTCCTC-GCCATAGCAGTCA 378085 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 || || || || || | || || | || ||||| | ||| || |||||| || Sbjct 378084 GACAGACCGGGGCACTCGGCAGGGCACATCAGCGACCAGTCCCCATTCTGCTCAACGCGA 378025 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820 ||| || ||||| |||||||| ||||| ||| | || || ||| ||||||| Sbjct 378024 CGCATAAACAGGTCGGGGATCCACAGCGCGAGGAACAAGTCGCGTGCGCGCACTTCTTCC 377965 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || |||| || | ||| || | | ||||| |||||| || |||||| Sbjct 377964 TTGCCGTGGTTCTTGCGCAGGTCGATAAATTCAAACACATCCGAGTGCCAGGGCTCCAGG 377905 Query 116881 TACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937 || | || | | || ||| || |||| | || || | ||| || | Sbjct 377904 TAAATGGCAAAGGCGCCTGGGCGCTTGTTGCCGCCCTGATCCACGTAGCGCGCGGTATTG 377845 Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TAC 116995 || | || |||||||| || | ||||| | | ||| ||||| || || ||| Sbjct 377844 TTGTACACACGAAGCATGGGCACAATACCGTTACTCACGCCGTTTGTGCCAGCAATGTAC 377785 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 ||| | | || | | | |||||||| || ||||| || || ||| ||| |||| Sbjct 377784 GAGCC--CGTCGCACGAATGTTGTGGATGTTCAGGCCAATGCCACCGGCCGTCTTGGAGA 377727 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | || ||| | |||| || | || || || || ||||| || |||| | || Sbjct 377726 TCATGGCACACGTCTTGAGCGTGTCATAAATGCCCTCAATCGAATCGTCCTTCATACTGA 377667 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 |||||||| |||||| || || || ||||| || ||||| |||||||| | || Sbjct 377666 CAAGGAAGCACGACGACATCTGAGGGTGGGGCGTACCCGCATTGAACAGGGTTGGCGACG 377607 Query 117176 CGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCT 117234 |||| |||| | | | | |||||| | | ||| ||||| | | || || || Sbjct 377606 CGTGCGTGAA-AGCCTTCTCGGACATGTAGTTGTACGTCTCAATGGCACTCTTGATATCC 377548 Query 117235 TCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 || ||||| ||||| | | || ||||| | ||||| Sbjct 377547 TCGCCGTGGATACCAACAGCCACACGCATGAGCATGT 377511 Score = 111 bits (122), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||| |||||||| || ||||| || |||||||| |||| || Sbjct 365626 GCAAAGTCGGTGTGCAGACCTTCGTCACGCGAAATGAGCTCGTTCGAGAACGACAGGCCG 365685 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| ||||||||||| | |||||| |||| ||| || || ||||| ||||| Sbjct 365686 GGCATGAGGCCCCGCTTCTTGAGCCAGAAGATCGACGCAAACGAACCCGAGAAAAAGATA 365745 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCA-A 127697 |||||||| || || || | || ||||| | || || || || |||| | | Sbjct 365746 CCCTCCACGGCTGCAAAAGCCACAAGGCGCTCCGAGAACGA--GGCACGCTTGTCCGAGA 365803 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| || ||||| | ||||||| || || |||| |||| |||||| | || Sbjct 365804 TCCAGCGCAGGGCCCAGTCGGCCTTTTGCTTGACGACGGGGATCGTCTCGATCGCATTAA 365863 Query 127758 AGAG 127761 |||| Sbjct 365864 AGAG 365867 >seq3 Length=1323904 Score = 102 bits (112), Expect = 1e-16 Identities = 222/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || ||||| | |||| || || | |||| ||| || ||||| ||||| || Sbjct 259350 CTTGAGCAGCGATGGATAAAAGTGGTCGAGGAAGTTGATGATCAGCCCCTTGATGTGGGA 259409 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACA-T 176714 ||||| |||| |||||||| ||||| || | || ||||| || || || | Sbjct 259410 GCCATCAAAATCCTGGTCCGTCATGATCATCAGGCTGCCGTAGCGCAGGCCGTCCACGCT 259469 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | || || |||| || || || || |||| ||| | ||| | | |||| |||| | Sbjct 259470 CGTG-TACACCTTGCCGTGCTGCAGGCCCAGAATTTCCTTAATGTGCTTGATCTCTGCAT 259528 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| ||| | || || || || ||||| |||| ||||| || || | Sbjct 259529 TCTTCATGATTTGATCGTGAGATGCCTCTCGTACATTGAGCAACTTACCGCGCAGCGGAA 259588 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 |||||||||| ||||| || ||| | || ||||| ||| || || | ||| || | Sbjct 259589 ACACACCGTACGCGTCACGGCCCACCTCGCTGATACCAGAAACGGCAAGCGCCTTGGCCG 259648 Query 176895 AATCACCCTCCGTCACGATGAGCGTACACT 176924 | ||||| || || | ||| ||||| |||| Sbjct 259649 AGTCACCTTCTGTGAGGATCAGCGTGCACT 259678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507100305080