Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6 152 1e-31 seq1 136 9e-27 seq4 134 3e-26 >seq6 Length=615380 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||||||| ||| || || || ||||| ||| ||||| | ||||| || Sbjct 241353 ACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCC 241412 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || |||||||| || || || || || ||||| || Sbjct 241413 AGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGG 241472 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| || ||||| ||| ||||| |||||||| | |||||| Sbjct 241473 ATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 241532 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || |||||||||||||| Sbjct 241533 CCGGTCAGGGTCTTGACGAACACTTGCAT 241561 >seq1 Length=1489088 Score = 136 bits (150), Expect = 9e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||| ||| || || || ||||| ||| || || | || ||||| Sbjct 496523 ACGAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTCC 496582 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| ||||||||||| || ||||| ||| Sbjct 496583 AGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 496642 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||| || ||||| |||||||| || ||||| || || | |||||| Sbjct 496643 ATTTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCCAGCGTGATCGTCTTG 496702 Query 195112 CCTGT 195116 || || Sbjct 496703 CCAGT 496707 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 195025 TCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAA 195084 || ||||||||||| || ||||| |||||||| |||||| || ||||| |||||||| Sbjct 497236 TCCGGAGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCCGAC 497295 Query 195085 CTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | |||||| || || | ||||| || || | |||||| Sbjct 497296 GACTCGACTTCCAGCGTGATCGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 497351 >seq4 Length=1186707 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || ||||| ||||| ||| || || | || || ||| Sbjct 399072 ACGAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTACGGCCGTCCTCG 399013 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || |||||||| || || || || || ||||| || Sbjct 399012 AGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGG 398953 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||| || ||| || ||||| || | |||||| Sbjct 398952 ATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGATTCAACCTCAAGCGTGATCGTCTTG 398893 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | |||||| Sbjct 398892 CCAGTCAGAGTCTTGACGAAGATTTGCAT 398864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481415201971