Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 125 6e-24 seq1 118 1e-21 seq6 113 4e-20 >seq4 Length=1186707 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| ||||||||||| ||| || ||| || |||| || ||||||||||| Sbjct 399060 GTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTACGGCCGTCCTCGAGCTGCTTACCG 399001 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || |||| ||||| ||||||| || | | |||||||||| |||||| ||| Sbjct 399000 GCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 398941 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||| ||||| ||||| | ||||||||| || || |||| ||| Sbjct 398940 ACATTGTCGATCGTGTCTGAGGATTCAACCTCAAGCGTGATCGTCTTGCCAGTCAGAGTC 398881 Query 35720 TTCACAAATATCTGCAT 35736 || || || || ||||| Sbjct 398880 TTGACGAAGATTTGCAT 398864 >seq1 Length=1489088 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | || | ||| |||||||| || |||||||| ||| | Sbjct 496505 CCACCACGAAGGCGCAGCACGAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 496564 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| ||||| ||||||| |||| Sbjct 496565 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGAGGA 496624 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| ||| ||| | ||| | | | | | |||||| ||| || || Sbjct 496625 ATGCCCTCCTTGTCC-TGAATTTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCGAC 496683 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 |||| ||||||||| || || || Sbjct 496684 TTCCAGCGTGATCGTCTTGCCAGT 496707 >seq6 Length=615380 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| ||| || || || | || ||||||||||| || Sbjct 241365 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCCAGCTGCTTGCCG 241424 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| |||| ||||| ||||||| || | | |||||||||| |||||| |||| Sbjct 241425 GCAAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 241484 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | ||||||| || |||||||| | |||||||| || || |||| || Sbjct 241485 ACATTCTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCGGTCAGGGTC 241544 Query 35720 TTCACAAATATCTGCAT 35736 || || || | ||||| Sbjct 241545 TTGACGAACACTTGCAT 241561 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | | ||| | ||| | ||| |||||||| ||||| ||||| || | Sbjct 150933 CCACCGCGCAAACGAAGCACGAGATGGAGCGTGCTCTCCTTCTGAATATTGTAGTCACTC 150874 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| | || ||||||||||| |||||||| |||| || || ||||||| || Sbjct 150873 AATGTTCGTCCATCCTCCAGCTGCTTTCCCGCAAAAATCAGGCGTTGTTGGTCCGGTGGG 150814 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | | ||||||||| |||||| Sbjct 150813 ATTCCTTCCTTGTCCTGGATCTT 150791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793526746040