Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8 114 2e-20 seq3 102 1e-16 >seq8 Length=423986 Score = 114 bits (126), Expect = 2e-20 Identities = 368/563 (65%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 129700 CTCATCTGTGTCGTCATCCAGCTTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGT 129759 |||||| || || || | |||| ||||||| | || || |||||| ||||| | Sbjct 365310 CTCATCCTTGGCGACACCGGCCTTGGCATAGTCGGCGACGCGGCGCTCGAAAAAGTTCGA 365369 Query 129760 CTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGC 129819 ||| || | || || ||||||||||| ||||| || ||| | ||||| | ||| Sbjct 365370 CTTGCCCTGCAGCGAAATGTTCTCCATAAAGTCAAAGGGATTCGTCGAGTTGTAG--TGC 365427 Query 129820 T--GGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATC 129877 | || || | | ||| ||||| || | || |||||||||||| ||||| Sbjct 365428 TTAGGGTTGCCGAGGTTGACGAGCAGACGGTCGGCCACAAACTCAATGTACTGGCACATC 365487 Query 129878 TTCTCGGAGTTCATACCGATGAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTC 129936 || |||||| || || || | | ||| || ||||| | || ||| ||| Sbjct 365488 AGGCGGGCGTTCATGCCAATCAGCG-AGACGGGCAGAGCGTCGGTCAAAAAGTCCTGCTC 365546 Query 129937 AATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAA 129996 |||| ||||||| ||| | |||| || | || || | | | | || || Sbjct 365547 AATGGCCACAGCCTCCGTAATGATGCGGTTCACTGTGTCGGGGTGGGCGCGCTTCTTCAG 365606 Query 129997 AGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTC 130056 | ||||| |||||| || ||| ||||| |||||||| || ||||| || Sbjct 365607 GTGGCTAAAGAGGAGGCAGGCAAAGTCGGTGTGCAGACCTTCGTCACGCGAAATGAGCTC 365666 Query 130057 ATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA 130116 |||||||| |||| || |||||||| ||||||||||| | |||||| |||| ||| Sbjct 365667 GTTCGAGAACGACAGGCCGGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATCGACGCAAA 365726 Query 130117 TGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || || ||||| ||||| |||||||| || || || | || ||||| | || || Sbjct 365727 CGAACCCGAGAAAAAGATACCCTCCACGGCTGCAAAAGCCACAAGGCGCTCCGAGAACGA 365786 Query 130177 GCGGGAC-TTTGTATCA-AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGG 130234 || || |||| | | ||| || ||||| | ||||||| || || ||| Sbjct 365787 --GGCACGCTTGTCCGAGATCCAGCGCAGGGCCCAGTCGGCCTTTTGCTTGACGACGGGG 365844 Query 130235 ACGGTCTGGATCGCTTCAAAGAG 130257 | |||| |||||| | |||||| Sbjct 365845 ATCGTCTCGATCGCATTAAAGAG 365867 >seq3 Length=1323904 Score = 102 bits (112), Expect = 1e-16 Identities = 222/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| |||||||| | |||| || || | |||| ||| || ||||| ||||| || Sbjct 259350 CTTGAGCAGCGATGGATAAAAGTGGTCGAGGAAGTTGATGATCAGCCCCTTGATGTGGGA 259409 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACA-T 179851 ||||| |||| |||||||| ||||| || | || ||||| || || || | Sbjct 259410 GCCATCAAAATCCTGGTCCGTCATGATCATCAGGCTGCCGTAGCGCAGGCCGTCCACGCT 259469 Query 179852 CTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 179911 | || || |||| || || || || |||| || | ||| | | |||| |||| | Sbjct 259470 CGTG-TACACCTTGCCGTGCTGCAGGCCCAGAATTTCCTTAATGTGCTTGATCTCTGCAT 259528 Query 179912 TTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGA 179971 | ||| ||| | || || ||||| ||||| |||| || || || || | Sbjct 259529 TCTTCATGATTTGATCGTGAGATGCCTCTCGTACATTGAGCAACTTACCGCGCAGCGGAA 259588 Query 179972 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 180031 |||||||||| ||||| || ||| | || ||||| ||| || || | ||| || | Sbjct 259589 ACACACCGTACGCGTCACGGCCCACCTCGCTGATACCAGAAACGGCAAGCGCCTTGGCCG 259648 Query 180032 AATCACCCTCCGTCACGATGAGCGTACACT 180061 | ||||| || || | ||| ||||| |||| Sbjct 259649 AGTCACCTTCTGTGAGGATCAGCGTGCACT 259678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435099504280