Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6 167 5e-36 seq4 143 6e-29 seq1 132 1e-25 >seq6 Length=615380 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||||||| ||| || |||||||| || || || || | ||||| Sbjct 241350 AGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCC 241409 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| |||||||| || || | || ||||||||| Sbjct 241410 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCC 241469 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| || || ||||| || ||||||||| Sbjct 241470 TGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 241529 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || ||||| ||||| Sbjct 241530 TTCCCGGTCAGGGTCTTGACGAACACTTGCAT 241561 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || || || || ||| ||| || || || || || || | ||| | || | ||||| Sbjct 150918 AGCACGAGATGGAGCGTGCTCTCCTTCTGAATATTGTAGTCACTCAATGTTCGT-CCATC 150860 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||||||||| || || || || |||||||||||||| || || | |||||||||||| Sbjct 150859 CTCCAGCTGCTTTCCCGCAAAAATCAGGCGTTGTTGGTCCGGTGGGATTCCTTCCTTGTC 150800 Query 211022 CTGGATCTTTTGTTTCAC 211039 ||||||||| |||||| Sbjct 150799 CTGGATCTTGGTTTTCAC 150782 >seq4 Length=1186707 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || || ||||| || || ||||| | || || Sbjct 399075 AGCACGAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTACGGCCGTCC 399016 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || |||||||| || || | || ||||||||| Sbjct 399015 TCGAGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCC 398956 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| ||||| ||| ||||||||| || ||||||||| Sbjct 398955 TGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGATTCAACCTCAAGCGTGATCGTC 398896 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 398895 TTGCCAGTCAGAGTCTTGACGAAGATTTGCAT 398864 >seq1 Length=1489088 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || |||||||| ||| ||| || |||||||| || || || || Sbjct 496510 ACGAAGGCGCAGCACGAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGT 496569 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||||||||||||| |||||||| || || |||||||| ||||||| || Sbjct 496570 ACGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGAGGAATGCC 496629 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| || || || || || || || ||||| || || || || || Sbjct 496630 CTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCCAG 496689 Query 211073 AGTGATCGTCTTTCCCGTGAG 211093 ||||||||||| || ||||| Sbjct 496690 CGTGATCGTCTTGCCAGTGAG 496710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151806928745